Solidesulfovibrio magneticus: DMR_43760
Help
Entry
DMR_43760 CDS
T00917
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dma
Solidesulfovibrio magneticus
Pathway
dma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMR_43760 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dma03019
]
DMR_43760 (rhlE)
Enzymes [BR:
dma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMR_43760 (rhlE)
Messenger RNA biogenesis [BR:
dma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMR_43760 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Flavi_DEAD
Shikimate_DH
ASFV_J13L
Motif
Other DBs
NCBI-ProteinID:
BAH77867
UniProt:
C4XQY7
LinkDB
All DBs
Position
4959921..4961411
Genome browser
AA seq
496 aa
AA seq
DB search
MSFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPIL
HRLITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALR
QGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQT
LLFSATMPPAISGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLLGEAG
KESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATDI
AARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESHM
KKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYGDRPR
GPRPEGARADSARDDRPRSDRPRSDRPAADRPRSDRPRTERQPSDERRSTFGLGGADNRS
GNQRPRRAYNDGASAA
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttgagcttcgactctttttgcctgcatgattccctgatcgccaacatcaagcgcgccgga
tacgaaacccccacgcccatccaggccgaggccgtgccccacgtcatggaaggccatgac
ctcatgggcctggcccagaccggcaccggcaagaccgccgcgttcctgttgccgatcctg
catcgcctcatcaccaacccggcccgcacccggtcgccccgtacgctcatcctggccccc
acccgcgagctggccgaacagattttccgctccaccctggacttcatgcgcggcacccgc
ctgcgcgccacggtcatctacggcggcgtgggcatgttcccccaggtgcgcgccctgcgt
cagggcgtggacgtcatcgtggcctgcccgggccggctgctggatcatttgaaccagggc
aacgtccgcttcgacggcctggagacgctggtcctcgacgaagccgaccacatgtttgac
atgggctttttgcccgacatcaagcgcatcctggccgccctgccggccaagcgccagacc
ctgctcttctcggccaccatgcctccggccatctccggcctggccgccgagacgctcacc
gacccggtcaccgtgcgcatcggccatctggccccgctgtccaccgtggagcacgccatc
tacccggtctcccataaccagaaggcccccctgctgctgcacctgctcggcgaagccggc
aaggaatcggtgatcgtcttcacccgcaccaagcaccgggccaagaacctggcccagcag
ctgtgccgctccggccacaaggccacctgcttgcagggcaatctgtcccagcgccagcgc
cagatcgccatggacggcttccgtcgcggctccttccagattctggtggccacggacatc
gccgcccggggcatcgacgtctcccaggtcgcccacgtggtcaacttcgacatcccggac
accgccgaggcctacacccaccgcatcggccgcaccggccgggccgaacgtgacggccag
gcccacaccttcgtcaccggcgaagacatgggcatggtccgggccatcgagtcccacatg
aaaaagcccctgccccgacgcaacgtcgaaggcttcgagcccgagcccggcgaattccgc
cgctccgctccggccccgcgcagcgccgcccggccccgccagggctacggcgcgccccgc
cagggcggctacggcgaccgtcagcgccagggcgaccgcccctacggcgaccgcccccgc
ggcccccggcccgaaggcgcgcgcgccgacagcgcccgtgacgaccgtccccgctccgat
cggccgcgcagcgaccgcccggcggccgaccgcccccggtccgaccggccgcgcaccgag
cgccagccgtccgacgagcgccgctccaccttcggccttggcggcgccgacaaccgctcg
ggcaaccagcgcccccgccgcgcctacaacgacggcgcttccgccgcctaa
DBGET
integrated database retrieval system
