Dactylosporangium matsuzakiense: Dmats_09365
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Entry
Dmats_09365 CDS
T08700
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dmat
Dactylosporangium matsuzakiense
Brite
KEGG Orthology (KO) [BR:
dmat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmat03019
]
Dmats_09365 (hrpA)
Enzymes [BR:
dmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dmats_09365 (hrpA)
Messenger RNA biogenesis [BR:
dmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dmats_09365 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
HA2_N
Helicase_C
HA2_C
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
AAA_30
ResIII
SLFN-g3_helicase
AAA_16
AAA_23
AAA_25
Helicase_RecD
ABC_tran
PhoH
CCDC32
SRP54
DUF7783
Motif
Other DBs
NCBI-ProteinID:
UWZ46606
LinkDB
All DBs
Position
complement(2146430..2150299)
Genome browser
AA seq
1289 aa
AA seq
DB search
MSETPQPTSLSELRARLAGLMPQDQHRLRRRIDGAKRSRNAQGIAEAIKADVERAEQRVA
ARRAARPEISYPEQLPVSQRKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVS
GQIGHTQPRRIAARTVAERVAEELKTELGATVGFKVRFTDQSSEQTMVKVMTDGILLAEI
QQDRLLRRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKLIITSATIDPERFSRHFG
DAPIVEVSGRTYPVEVRYRPLVAPDEGEDEVDQFDAIAMAVMELQDEGPGDVLVFLSGER
EIRDTADALTKLDLPNTEILPLFARLSFAEQHRVFQPHSGRRVVLATNVAETSLTVPGIK
YVVDPGTARISRYSHRLKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFNARP
EFTDPEILRTNLASVILQMIALGLGDLGAFPFIDPPDKRNVTAGVQLLEELGALDDKKAL
TPLGRKLSQLPVDPRLARMVLEAEKNGAVREVMVIAAALSIQDPRERPADKQAQAQQSHA
RFADKDSDFTGFINLWNYLQEKQKELSSNQFRKLCRAEYLNYLRVREWQDIYSQLRQVLK
TMDVTPNEEPAAAYPIHVSLLAGLLSHIGLKEGDKSEYLGARNAKFAVFPGSSLFRKTPR
WVMAAELVETTRLWARVAAKIEPEWIEPLAQHLVKRQYSEPHWERKQAAVMAVERVTLYG
VPIVTNRKVNYGRIDPALSRELFIRHALVEGDWETSHAFFEENRRLLGEVEELEARARRR
DLLVDDETLFDFYDNRLPAEVVSGRHFDSWWKKTRRDSPDLLTFDPAMLVNAGADQIRQE
QYPDAWEQDGRRFALTYQFEPGREADGVTVHIGLPLLGSVRDADFAWQVPGLREDLVTAL
IKSLPKATRRNFVPAPDTARDALLDMPPRAADLLDSLELALRRMTGVSVPRAEWDLSKVP
EHLKMTFRIVDDAGQVLGEGKDLGVLRARLAPRLEKTVAEAAVDVVRKGTTRWEFGTLPR
RLDRTVAGHTLTVYPALVDEGESVAVQAFDIPARQEYEMWRGTRRLLQLTLPPPARFVQG
RLSNADKLALSRNPHRSAVDLLDDCAAAAIDQLMTDAGGPAWDEAAFTALRDKVRADLVD
LTLEVVSSVRKILAASYDVEQRLARTKNPLLLPALTDMRGQLAKLVYRGFVTDTGWQRLP
DLERYLRGIEKRLEKVPTDTGRDRDRMLTVQEIQKEYDQLLAAMPMTPQLREIRWMIEEL
RVGLFAQALGTAYPISDVRIYRAMDALPA
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaacgccccagccgacgagcctgagtgagctgcgcgctcgcctcgccgggttg
atgccccaggaccagcatcggctgcggcgccggatcgacggggccaagcgctcgcgcaac
gcccagggtatcgccgaggcgatcaaggccgatgtcgagcgggccgagcagcgcgtcgcc
gcccgcagagccgcccggccggagatctcctatccggagcagctgccggtcagccagcgc
aaggacgagatcctggcggcgatccgcgaccaccaggtggtgatcgtggccggcgagacc
gggtcgggcaagacgacccagctgcccaagatctgcctggagctgggccgcggcgtcagc
gggcagatcggccacacccagccccggcgcatcgccgcccggaccgtcgccgagcgggtc
gccgaggagctcaagaccgagctgggcgcgaccgtcggcttcaaggtgcgcttcaccgac
cagtcgtccgagcagacgatggtcaaggtgatgaccgacggcatcctgctggccgagatc
cagcaggaccggctgctgcgccggtacgacacgctcatcatcgacgaggcccacgagcgc
agcctcaacatcgacttcatcctcgggtacctcaagcagctcctcccccgccgccccgac
ctcaagctcatcatcacgtcggcgaccatcgaccccgagcggttctcccggcacttcggt
gacgccccgatcgtcgaggtctccggccgcacctacccggtcgaggtccgctaccggccg
ctcgtggcgcccgacgagggcgaggacgaggtcgaccagttcgacgcgatcgccatggcc
gtcatggagctgcaggacgagggcccgggcgatgtcctggtgttcctctcgggcgagcgg
gagatccgcgacaccgccgacgcgctcaccaagctggacctgcccaacacggagatcctg
ccgctgttcgcgcggctctccttcgccgagcagcaccgggtgttccagccgcactccggg
cgccgggtcgtgctcgccaccaacgtggccgagacctcgctgaccgtccccggcatcaag
tatgtcgtcgatccggggacggccaggatctcgcggtacagccaccgtttgaaggttcag
cgactgccgatcgagcccgtctcccaggcatcggccaaccagcgcaagggccggtgcggg
cgcacgtccgacggcatctgcatccgcctctacagcgaggacgacttcaacgcgcggccc
gagttcaccgacccggagatcctgcgcaccaacctggcgtcggtcatcctgcagatgatc
gcgctgggcctcggcgacctcggcgcgttcccgttcatcgacccgcccgacaagcgcaac
gtcaccgcgggcgtgcagctgcttgaagagctcggcgccctcgatgacaagaaggccctg
accccgctcggccggaagctgtcgcagctgccggtcgacccgcggctggcccggatggtc
ctggaggccgagaagaacggcgccgtgcgcgaggtcatggtgatcgccgcggcgctgtcc
atccaggacccgcgtgagcgcccggccgacaagcaggcccaggcccagcagtcgcacgcc
cggttcgccgacaaggactcggacttcaccggcttcatcaacctgtggaactacctgcag
gagaagcagaaggagctctccagcaaccagttccgcaagctgtgccgggccgaatacctc
aactacctgcgcgtccgcgagtggcaggacatctacagccagctgcgccaggtcctcaag
acgatggacgtgacgccgaacgaggagccggcggcggcctacccgattcacgtgtcgctc
ctggccggcctgctctcgcacatcgggctgaaggaaggggacaagagcgagtacctcggc
gcccgcaacgcgaagttcgccgtgttcccgggctcttccctgttccgcaagacgccgcgc
tgggtgatggcggccgagctggtcgagacgacccgcctctgggcccgggtcgccgccaag
atcgagccggagtggatcgagcccctcgctcagcacctggtcaagcgccagtacagcgag
ccgcactgggagcgcaagcaggccgcggtcatggcggtcgagcgggtgacgctctacggc
gtcccgatcgtcaccaaccgcaaggtcaactacggccggatcgaccccgcgctctcccgc
gagctgttcatccgccacgcgctcgtcgagggcgactgggagacctctcacgcgttcttc
gaggagaaccgccgcctgctcggcgaggtcgaggagctcgaggcccgcgcccgccgccgc
gacctgctcgtggacgacgagacgctcttcgacttctacgacaaccggctgcccgccgag
gtggtctccggccggcacttcgacagctggtggaagaagacccgccgcgactcccccgac
ctgctgacgttcgacccggccatgctcgtcaacgccggcgccgaccagatccgccaggag
cagtaccccgacgcctgggagcaggacggccgccgcttcgcgctcacctaccagttcgag
ccgggccgggaggccgacggcgtcaccgtccacatcggactcccgctgctcggctcggtc
cgcgacgccgacttcgcctggcaggtccccgggctgcgcgaggacctcgtcaccgccctg
atcaagtccctgccgaaggccacccgccgcaacttcgtcccggcccccgacaccgcccgc
gacgccctcctcgacatgccgccccgggccgccgacctgctcgactcgctcgagctggcg
ctgcgccgcatgacaggcgtctcggtcccccgcgccgagtgggacctgtcgaaggtcccc
gagcacctgaagatgacgttccgcatcgtcgacgacgccggccaggtcttgggcgaaggc
aaggacctgggtgtactgcgggcacgcctggccccgcgcctggagaagacggtcgccgag
gccgccgtggacgtggtgcgcaagggcacgacgcgctgggagttcggcaccctgccccgc
cgcctcgaccgcaccgtcgccggccacaccctcaccgtgtatccggccctggtcgacgag
ggcgagtcggtggcggtccaggcgttcgacatcccggcccgccaggagtacgagatgtgg
cgcggcacccgccgcctcctccagctcacgctccccccgccggcccgcttcgtccagggc
cgcctctccaacgccgacaagctggcgctgagccgcaacccccaccgcagcgccgtcgac
ctcctggacgactgtgccgccgccgccatcgaccagctcatgaccgacgcgggcggcccg
gcgtgggacgaggccgcgttcacggccctgcgcgacaaggtgcgagccgacctggtcgac
ctgacgctggaggtggtgtcgagcgtccgcaagatcctggccgcgtcgtacgacgtcgag
cagcgcctggcccgcacgaagaacccgctgctgctgccggccctgaccgacatgcgcggc
cagctcgccaagctggtgtaccgcggcttcgtcaccgacaccggctggcagcgcctcccg
gacctggagcgctacctgcgcggcatcgagaagcgcctggagaaggtgccgaccgacacc
ggccgcgaccgcgaccgcatgctcacggtccaggagatccagaaggagtacgaccagctc
ctggccgcgatgccgatgacgccgcagctgcgcgagatccgctggatgatcgaggagctc
cgggtgggcctcttcgcccaggccctcggcaccgcctacccgatctcggacgtgcgcatc
taccgggccatggacgccctcccggcctga
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