Dactylosporangium matsuzakiense: Dmats_12720
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Entry
Dmats_12720 CDS
T08700
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dmat
Dactylosporangium matsuzakiense
Pathway
dmat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmats_12720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmat03019
]
Dmats_12720
03009 Ribosome biogenesis [BR:
dmat03009
]
Dmats_12720
Enzymes [BR:
dmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dmats_12720
Messenger RNA biogenesis [BR:
dmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dmats_12720
Ribosome biogenesis [BR:
dmat03009
]
Prokaryotic type
rRNA helicases
Dmats_12720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UWZ49524
LinkDB
All DBs
Position
complement(2867527..2869137)
Genome browser
AA seq
536 aa
AA seq
DB search
MLEGRDLLGQAATGTGKTAAFALPLLQRLPAPGGDNPSALVLVPTRELAVQVSEAIHRYG
RDLGVRVLPIYGGQPIGRQLRSLEFGVDVVVATPGRALDHLGRGTLRLHDLHVVVLDEAD
EMLDMGFAEDIEAILAATPEDRQTVLFSATMPPRIDGLASSHLTDPVRIQIGREPTPAGE
APLVRQMAYVVPRAHKPAALGRVLDVEAPGAAIVFCRTRDEVDQLTETLNGRGYRAEALH
GGMGQEQRDRVMARLRNGTADLLVATDVAARGLDVEHLTHVVNYDVPSAPESYVHRIGRV
GRAGREGVAITLAEPREHRMLKTIERVTKQRIIIEKVPSVADLRARRMELTRAKLHEILV
AEDGTERFRAIVESLGDEFDPMEIALAAVKFAHEATAVGENDEEEIPDVTLRQPRDRDDR
QGQGGGPNPNRRVSVRDADGRGRGRETGGRRAPTGGMTRLFVGAGRAAGIRPQDLVGAIT
GESSLTGRDVGAIEIADRFALVEVPDGAVDEVIDTLRRTTLKGRRPVVRRERPRTD
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagggcgggacctgctggggcaggccgccaccggtaccgggaaaaccgccgca
ttcgctctgccgctcctgcaacggctccccgcgcccggcggcgacaacccgtcggcgctg
gtgcttgtccccacccgggagctcgccgtgcaggtgtcggaggcgatccaccgatacggc
cgcgacctcggcgtccgcgtcctgcccatctacggcggtcagccgatcggccggcagctg
cgctcgctggagttcggcgtcgacgtggtcgtcgccacgcccgggcgcgcgctcgaccac
ctcggccgcgggaccctgcgcctgcacgacctgcacgtcgtggtcctcgacgaggccgac
gagatgctcgacatgggcttcgccgaggacatcgaggcgatcctggccgcgacccccgaa
gaccgccagactgtgctgttctcggccacgatgccgccgcgcatcgacggcctggccagc
agccacctgaccgacccggtccggatccagatcggccgcgagcccaccccggccggtgag
gcgccgctggttcgtcagatggcctatgtggtaccgcgcgcccacaagccggccgcgctc
ggtcgcgtgctggacgtcgaggcgccgggcgcggcgatcgtcttctgccggacccgcgac
gaggtcgaccagctcaccgagacgctgaacggccgggggtaccgggccgaggccctgcac
ggcggcatgggccaggagcagcgcgaccgggtcatggcccgcctccgcaacggcaccgcc
gacctgctcgtggccaccgacgtcgccgcccgcggcctggacgtcgagcacctcacgcac
gtggtgaactacgacgtgccctcggcgccggagtcgtacgtgcaccggatcggccgcgtg
ggccgggccggccgcgagggcgtcgccatcaccctggccgagccgcgcgagcaccgcatg
ctcaagaccatcgagcgcgtcaccaagcagcgcatcatcatcgagaaggtcccctcggtc
gcggacctgcgcgcccggcgcatggagctcacccgggccaagctccacgagatcctggtg
gccgaggacggcacggagcgcttccgcgcgatcgtggagtccctgggcgacgagttcgac
ccgatggagatcgcgctggccgctgtcaagttcgcccacgaggcgacggcggtcggtgag
aacgacgaggaggagatccccgacgtcaccctccgccagccccgcgaccgcgacgatcgc
cagggccagggcggcggccccaacccgaaccgccgcgtgagcgtccgcgacgccgacggc
cggggccggggccgcgagaccggcgggcgccgcgcccccacgggcggcatgacccggctg
ttcgtgggcgccggccgcgccgccggcatccgcccccaggacctggtcggcgccatcacc
ggcgagtcctcgctgaccggccgcgacgtcggcgcgatcgagatcgccgaccggttcgcc
ctggtcgaggtcccggacggcgccgtcgacgaggtcatcgacacgctgcgccgcacgacg
ctgaagggccgccgcccggtggtccgccgcgagcgcccccgcacggactag
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