Dactylosporangium matsuzakiense: Dmats_42240
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Entry
Dmats_42240 CDS
T08700
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dmat
Dactylosporangium matsuzakiense
Pathway
dmat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmats_42240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmat03019
]
Dmats_42240
03009 Ribosome biogenesis [BR:
dmat03009
]
Dmats_42240
Enzymes [BR:
dmat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dmats_42240
Messenger RNA biogenesis [BR:
dmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dmats_42240
Ribosome biogenesis [BR:
dmat03009
]
Prokaryotic type
rRNA processing factors
Dmats_42240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWZ43971
LinkDB
All DBs
Position
complement(9282541..9285345)
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AA seq
934 aa
AA seq
DB search
MFDNESASGETTGEEPVAAAANAEETTAPVRRTRRRTTKAAADAPAAEPVDPVEAPAEEP
APTTTRRRRKVTPAAEAAETGDSGQQALPLEEAPVPVKATRARRSRAKVVEPEPEPDPLP
IAAAEEPDEEPLAEELASEEAEEDSDTPEELEPLVVEEEEPPARRGRRAAPVQLLFMPPS
EQAAPVARVERVVERAEDEDFAEEEPVSRGRRRRRGRGASDDVLAEAPVEVVEAPVETDE
AETDDDDDDDEDGLDAGARRRRRRGRRGRGRGRGTAGDELDEGDETAEADGEEAADGEEP
EASADEDGEEDGEGLTRRRRRRRRKGSTDTEAGDDPHVVVKIREPRTVTRDRDEVQGVSG
STRLEAKRQRRRDGREQRRTRPPILSESEFLARREAVDRTMVIRQKNDRTQIAVLEDKVL
VEHYVTRASSSSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDATGLEGRT
RTIEQALKSGDSVLVQVTKDPIGTKGARLTSHIALSGRHLVYVPHGNASGISRKLSDVER
KRLRDVLKNLVPDGAGVIVRTAAEGASEDDLERDVTRLQAQWEAIQEKSRGSSAPAPLYE
EPELVVRVVRDLFNEDFRELVIQGNEAYESVEPYLSHVSPDLVDRVRRYTGTGDVFADLR
IDEQLIKALDRRVFLPSGGSLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNNLEAAEE
IVHQLRLRDLGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTR
KRVGQGLLEAFSETCEVCKGRGLIIHTEPIPEKRGGGGNGGGGHNGGGGHSNAVAKVASA
TSAPGVSSGVEEADAPAPRSRRRGRRGATAVAEEETAEAVTAVHDTQDASEEEGFAPIAS
EDDPDNAEDDDEEGAGNGARRRTRRGGVRRRTRP
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaacgagtcggcgagcggcgagaccaccggcgaagagccggtggctgctgca
gccaacgctgaagagaccactgcccctgtgcggcgcacgcgccgccggaccaccaaggcc
gccgccgacgcgccggccgccgagcccgtcgacccggtggaagcaccggccgaggagccg
gcccctaccaccacccgccgacggcggaaggtgacaccggccgccgaggccgccgaaacc
ggcgattccgggcagcaggcgctcccgctcgaggaggcgccggtgccggtcaaggccacc
cgggcccggcgcagccgggcgaaggtcgtcgagccggagccggagcccgatccgctgccc
atcgcggccgcggaggagcccgacgaggagcccctggccgaggagctcgcctccgaggag
gccgaggaggactcggacacgcccgaggagctcgagcccctggtcgtggaggaagaggag
ccgccggcccgccggggccgccgcgccgcgcccgtccagctgctgttcatgccgccgagc
gagcaggccgcgcccgtcgcccgggtcgagcgggtcgtcgagcgcgccgaggacgaggac
ttcgccgaggaggagccggtcagccggggccgccggcggcgccggggccggggcgcgagc
gacgatgtcctggccgaggcgccggtcgaggtggtcgaggcgcccgtcgagaccgacgag
gccgagaccgacgatgacgacgatgacgacgaggacggcctcgacgccggtgcccgccgc
cggcgccgccggggtcgccgcggccgtggccgtggccgcggtaccgccggggacgagctc
gacgagggcgacgagacggccgaggccgacggcgaggaagccgccgacggcgaggagccc
gaggcgtccgccgacgaggacggtgaggaggacggcgagggcctgacccgccgccgtcgc
cgccgccgccggaagggctccaccgacaccgaggccggcgacgatccgcacgtggtcgtc
aagatccgtgagccgcggaccgtgacccgcgaccgcgacgaggtccagggcgtctccggc
tcgacccggctggaggccaagcgccagcgccgccgggacggccgcgagcagcgccgcacc
cgcccgccgatcctcagcgagagcgagttcctggcccgccgcgaggccgtcgaccgcacg
atggtcatccggcagaagaacgaccgcacgcagatcgccgtgctcgaggacaaggtgctc
gtcgagcactacgtcacccgggcgtcgtcgagctcgatggtcggcaacgtgtacctcggc
cgtgtccagaacgtgctgcccagcatggaggccgcgttcgtcgacatcggccggggccgc
aacgccgtgctctacgccggtgaggtcaactgggacgccaccggactcgagggccgcacc
cgcaccatcgagcaggcgctgaagtccggcgactcggtgctcgtgcaggtcaccaaggac
ccgatcggcaccaagggcgcccgcctcaccagccacatcgcgctgtccggccggcacctg
gtctacgtgccgcacggcaacgcctcgggcatcagccgcaagctctccgacgtggagcgc
aagcgcctgcgcgacgtgctcaagaacctcgtgcccgacggcgccggcgtgatcgtgcgc
accgcggccgagggcgcctccgaggacgacctcgagcgcgacgtcacgcggctgcaggcg
cagtgggaggccatccaggagaagtcgcgcggcagcagcgcgccggccccgctctacgag
gagcccgagctcgtcgtgcgggtcgtgcgcgacctgttcaacgaggacttccgcgagctg
gtcatccagggcaacgaggcctacgagtcggtcgagccctacctgtcgcacgtctcgccc
gacctggtcgaccgggtgcgccgctacaccggcaccggcgacgtcttcgccgacctgcgc
atcgacgagcagctgatcaaggccctggaccggcgggtcttcctgccctccggcggcagc
ctggtcatcgaccgcaccgaggcgatgaccgtcgtggacgtcaacaccggcaagtacacc
ggcgccggcggcaacctcgaggagacggtcacccgcaacaacctcgaggcggccgaggag
atcgtccaccagctgcggctgcgtgacctcggcggcatcatcgtcatcgacttcatcgac
atggtcctggagtccaaccgcgagctggtgctgcgccggctgaccgagtgcctgggccgg
gaccggaccaagcaccaggtcaccgagatcacctccctgggcctggtccagatgacccgc
aagcgggtcgggcagggcctgctggaggcgttcagcgagacctgtgaggtctgcaagggc
cgcggcctgatcatccacaccgagccgatcccggagaagcgcggtggcggcggcaacggt
ggtggcggccacaacggcggtggcggccacagcaacgccgtggccaaggtcgcctcggcc
acgtccgcgccgggggtcagcagcggcgtggaggaggccgacgcacccgcgccgcgcagc
cgccgccgcggccgccgcggtgccaccgcggtcgccgaggaggagaccgccgaggccgtg
accgctgtccacgacacccaggacgcctcggaggaggagggcttcgcgcccatcgcctcc
gaggacgaccctgacaatgccgaggacgacgatgaggagggcgcgggcaacggagcccgc
cgccgcactcgccggggtggcgttcgccgccggacccggccctga
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