Dactylosporangium matsuzakiense: Dmats_43885
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Entry
Dmats_43885 CDS
T08700
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dmat
Dactylosporangium matsuzakiense
Pathway
dmat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dmats_43885 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmat03400
]
Dmats_43885 (mfd)
Enzymes [BR:
dmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dmats_43885 (mfd)
DNA repair and recombination proteins [BR:
dmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dmats_43885 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UWZ44247
LinkDB
All DBs
Position
9638794..9642384
Genome browser
AA seq
1196 aa
AA seq
DB search
MKLAGLSAAALADPALTRARDLARSGHSDQVDLTGPPAVRAFVAATIAAERPLLAVTATG
REAEDLAAALACLLEPESVAVYPSWETLPHERLSPRSDTVGRRLSVLRRLAHPTADAPRP
RVVVAPVRSVLQPQLKGLGDLEPIELHPGGSADLDALTQRLAELAYARVDLVTKRGEFAV
RGGILDVFPPTEEHPLRVEFWGDEVEEIRSFAVADQRTIEKVERLWAPPCRELLLTDQVR
ERAAALSTDHPQLAEMLDKLAGGIPVEGMESLAPALLGGTDSLELVLHCMPEGTHVLLCD
PERIRTRAHDLVRTSDEFLEASWAAAAVGGKAPIDLGAAAFRHLGDVRAAAASLGQPWWS
LSPFAATLDSAAPDEPWRLGEDAVVAVSDDAVAITLSAQAVPLYHGETARVVDDLKRLTG
DGWRVALVFEGTGPAQRAAEVLRGSDLGVNVVDRIDAPPATGVVTVTTGSLELGFLDEGA
RLAVITGTDISGGRGASTKDMRKMPSRRRNQIDPLELRAGDYVVHEQHGIGRYVEMVQRT
VNGADREYLVLEYAATKRGQPGDRLFVPTDQLDQLSRYVGGEAPTLHKMGGSEWQKAKSR
ARKAVREIAAQLIQLYAVRQNSQGHAFGPDTPWQRELEDAFPYQETPDQLAAIEEVKGDM
EKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHFNTFSERVSQF
PVEVRQLSRFQTPTETRLTMEKVTDGTVDIVIGTHRLLQTATRFKQLGLVIVDEEQRFGV
EHKEFLKQLRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTFVGAQDDK
QVSAAIHRELLRDGQVFYLHNRVESIERAARRLRELVPEARIAVAHGQMTEDALEKIMVG
FWEKEYDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRVGRGRERAYAYFLY
PPDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGVGFDLYV
RMVGEAVQQFKGERPEEDEPDVKIDLPVDAHLPLEYIGAERLRLEIYRKIAGAKDDAALD
EIVAEMKDRYGEPPEPVANLLAVARFRFLARAYGLTDVSLQGKHVRFGPLPLPDSKQMRL
KRLYPESVYKAAADTVSLPRPSTRRVGGEPMRDTQLLDWAAELLRTVLGDPVAAKP
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgcaggactctccgccgccgcgctcgccgaccccgccctcacccgggcccgt
gacctcgcccgctccggccacagcgaccaggtcgacctgaccgggccgccggccgtgcgg
gccttcgtcgccgccaccatcgccgccgagcggcccctgctggccgtgaccgccaccggc
cgcgaggccgaggacctggccgccgccctcgcgtgcctgctggagccggagtcggtggcc
gtgtacccgtcgtgggagaccctcccccacgagcggctctccccgcgctcggacaccgtc
ggccggcggctgtcggtgctgcgccgcctggcccacccgacagccgacgcgccccggccg
cgggtcgttgtcgccccggtccgctcggtcctccaaccccagctcaagggcctcggcgac
ctggagccgatcgagctgcaccccggcggctcggccgacctcgacgcgctcacgcagcgc
ctggccgagctggcctacgcccgggtcgacctggtcaccaagcgcggcgagttcgcggtc
cgcggcggcatcctcgacgtcttcccgccgaccgaggagcacccgctgcgggtggagttc
tggggcgacgaggtcgaggagatccgctccttcgccgtcgccgaccagcgcacgatcgag
aaggtcgagcggctgtgggccccgccgtgccgggaactgctgctcaccgaccaggtccgg
gagcgggcggcggccctgtccaccgaccacccgcagctggccgagatgctcgacaagctc
gccggcggcatccccgtcgagggcatggagtcgctggccccggccctgctcggcggcacc
gactccctcgagctcgtcctgcactgcatgcccgagggcacccacgtgctgctgtgcgac
ccggagcggatccggacccgggcccacgacctggtccggaccagcgacgagttcctggag
gccagctgggccgcggccgcggtgggcgggaaggccccgatcgacctcggcgcggcggcg
tttcgccacctgggcgacgtccgggcggccgccgcctcgctgggccagccgtggtggtcg
ctgagcccgttcgccgccacgctcgattcggccgctcccgacgagccctggcgtctcggc
gaagacgccgtcgtcgccgtctcggatgatgctgtggccataacgctctcggctcaggcc
gtgccgctgtaccacggcgagacggcccgggtggtcgacgatctcaagcggctgaccggc
gacggctggcgggtcgcgctggtgttcgagggcaccgggccggcccagcgcgcggccgag
gtgctgcgcggctccgacctcggcgtcaacgtcgtcgaccggatcgacgcgcccccggcg
acaggcgtcgtcaccgtcaccaccggctcgctcgagctcgggttcctcgacgagggggcc
cggctcgcggtcatcaccggcaccgacatctccggcggccgcggcgcgtccaccaaggac
atgcgcaagatgcccagccggcggcgcaaccagatcgacccgctggagctgcgggccggc
gactacgtcgtgcacgagcagcacggcatcggccgctacgtggagatggtccagcggacg
gtgaacggggccgaccgggagtacctcgtcctggaatacgccgcgaccaagcgcggccag
cccggcgaccggctcttcgtccccaccgaccagctcgaccagctctcccgctatgtcggc
ggcgaggcccccaccctgcacaagatgggcggctccgagtggcagaaggcgaagtcgcgg
gcccgtaaggcggtgcgggagatcgccgcgcagctgatccagctgtatgcggtacgacaa
aattcgcagggtcatgctttcgggccggacaccccatggcagcgggagctcgaggacgcg
ttcccctatcaggagacgcccgaccagctcgccgcgatcgaggaggtcaagggcgacatg
gagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaagaccgag
atcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctggtg
ccgaccacgctgctggcccagcagcacttcaacacgttctccgagcgggtctcgcagttc
ccggtcgaggtccggcagctgtcgcggttccagacgccgaccgagaccaggctgacgatg
gagaaggtcaccgacggcaccgtcgacatcgtcatcggcacccaccgcctcctgcagacc
gcgacccggttcaagcagctcggcctggtgatcgtcgacgaggagcagcgcttcggcgtc
gagcacaaggagttcctcaagcagctgcgcgcgtcggtcgacgtgctcaccatgtcggcc
accccgatcccgcgcacgctggagatggcgatcaccggcatccgcgagatgtcgacgatc
gccaccccgcccgaggagcgccacccggtcctcacgttcgtcggcgcccaggacgacaag
caggtctccgcggccatccaccgcgagctgctccgcgacggccaggtcttctacctgcac
aaccgggtcgagtcgatcgagcgggcggcccggcggctgcgggagctggtgcccgaggcc
cggatcgccgtcgcgcacggccagatgaccgaggacgccctcgaaaagatcatggtgggg
ttctgggagaaggagtacgacgtcctcgtctgcaccaccatcgtcgagagcggcatcgac
atccccaacgccaacaccctgatcgtcgagcgggccgacctgctgggcctggcccagctg
caccagatccggggccgggtcggccgcggccgcgagcgcgcctacgcctacttcctgtac
ccgcccgacaagccgctcaccgagcacgcccacgagcggctggccactatcgcgcagcac
accgagctgggcgcgggcatgtacgtggcgatgaaggacctcgagatccgcggggccggc
aacctcctcggcggcgagcagtccggccacatcgagggcgtcggcttcgacctctacgtg
cgcatggtcggcgaggcggtccagcagttcaagggcgagcggcccgaggaggacgagccc
gacgtcaagatcgacctgccggtcgacgcgcacctcccgctggagtacatcggggccgag
cgcctccgcctggagatctaccgcaagatcgccggggccaaggacgacgccgccctcgac
gagatcgtggccgagatgaaggaccgctacggcgagccgccggagccggtcgccaacctg
ctggccgtggcccgcttccgcttcctggcccgcgcttacggcctgaccgacgtgtcgctg
cagggcaagcacgtccgcttcggcccgctgccgctgcccgactcgaagcagatgcgcctc
aagcggctgtacccggagtcggtgtacaaggccgcggcggacacggtctcgctgccccgc
ccgtcgacccgccgggtcggtggcgagcccatgcgtgatacgcagttgctggactgggcg
gcggagctgctgcggaccgttctgggtgaccccgtcgcggcgaagccgtaa
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