Deinococcus metallilatus: E5F05_15815
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Entry
E5F05_15815 CDS
T09847
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dmb
Deinococcus metallilatus
Pathway
dmb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dmb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5F05_15815 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmb03021
]
E5F05_15815 (rpoC)
03400 DNA repair and recombination proteins [BR:
dmb03400
]
E5F05_15815 (rpoC)
Enzymes [BR:
dmb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5F05_15815 (rpoC)
Transcription machinery [BR:
dmb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5F05_15815 (rpoC)
DNA repair and recombination proteins [BR:
dmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5F05_15815 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
DUF244
Motif
Other DBs
NCBI-ProteinID:
QBY09281
LinkDB
All DBs
Position
2017709..2022322
Genome browser
AA seq
1537 aa
AA seq
DB search
MKDFNKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPQKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAG
QLEKVLYFSSFLVTQPLNAQKEGRPLKRGELLSDDEYRELRFGRQETYTLPNGTEAVIRD
GEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEQVEASLPLPAEVLVEQDSFRAGEI
LAELEQDVQITAPVDGTAFLFEMGEDSVMVELRDSAAEDAAQGEVLARVYIPHGMNVQVA
EGEVVEAGTVLATAEAGDRLRVSRDSRLTDVTFPKKKGDVKVTAHWTRRVEYAINPTMHV
LVGDGSEVRKGQKVVGAIDKEEEVVAEADGVITLHAPASIIVSKAKVYSYQDEPLVVNGD
RVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
EAELGEQMKDNSRHKRAKARKRLEVVRSFKRSGNNPSWMILETVPVMPPDLRPMVQVDGG
RFATSDLNDLYRRLINRNNRLKKLMSQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTN
PGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELF
KPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPA
NGEPNVKPSRDIILGIFTLTQLRKDNLGAGSEFANEQDALNALNEGRVALNTPITVNGVE
TSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVYDTSAGRVMFRRLVQEALGAQ
GHLVDTLVNLDTAYEKDHLKDMVMACYKELGIEATAGLLDALKDNGFKLSTTSGITIGID
DIVLPPNKGELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFS
RNYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIKASFREGLTVLEYFI
STHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTIMPLGATDERTGEW
RTRKGSEIETSIYGRTLTADVELQGGRVIPAGEMLSLEDVKAITKDAKNIGEVFVRTPLN
CRVRAGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDIT
MGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTATKISKGL
RLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIE
VIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANEALAEGQTPASWKPVLLGITKSSLT
TKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILGKLIPAGTGLTTVREMQVADDR
TLEKYGEGNVSPDSVTGTQRYDDTRPVSTPINPSYGD
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttcaacaaagtccgtatcgccatcgccagccccgcgaaaatccgcgagtgg
agctttggcgaggtggaaaagccggaaacgatcaactaccgcacgctcaagcccgagcgt
gagggcctcttcgacgaacgcatcttcgggccgcagaaggactacgagtgcgcctgcggc
aagtacaagcgtcagcggtatgaaggcaaggtctgcgaacgctgcggcgtggaagtcacc
tccagcaaggtgcggcgctaccgcatgggccatatcgacctggcgacgcccgccgcgcac
atctggtacgtgaaggacacgcccagcaagatcggcacgctgctggacctctcggccggg
caactggaaaaggtgctgtacttcagttccttcctggtcacccagccgctcaacgcgcag
aaggaaggccgcccgctcaagcgcggcgagctgctcagcgacgacgagtaccgcgagctg
cgcttcggccgtcaggagacgtacaccctgcccaacggcaccgaggccgtgattcgcgac
ggcgagtacgtcacgcgcggtcaggtgctgggcggcaacgtggtcagcaagatggacggc
ctggcccagtaccgtttcccccgccgcgccgagatcgcctacgccgagcaggtggaagcc
agcctgccgctgcccgccgaggtgctggtggagcaggacagcttccgcgccggggaaatc
ctggccgagctggaacaggacgtgcagatcaccgctccggtggacggtacggccttcctg
tttgagatgggcgaggacagcgtgatggtggagctgcgtgacagcgccgccgaggacgcc
gcgcaaggcgaagtgttggcccgcgtgtacatcccgcacgggatgaacgtgcaggtggcc
gagggcgaagtggtggaggccgggaccgtcctggcgaccgccgaagccggggaccgcctg
cgcgtgagccgcgacagccgcctgaccgacgtcaccttccccaagaagaagggggacgtg
aaggtcacggcgcactggacccgccgcgtcgagtacgcgatcaaccccacgatgcacgtg
ctggtcggggacggctcggaagtccgcaagggccagaaggtcgtcggggccatcgacaag
gaagaggaggtcgtggcggaagccgacggggtcatcaccctgcacgcccccgcctccatc
atcgtcagcaaggccaaggtctactcctaccaggacgagccgctggtggtgaacggggac
cgcgtggagccgggtgacgagctggccgacagcggcaacctgcgctcggaaatctcgggc
cgcgtggagatcgacctggtgcgcaagcaggtccgcgtgatcgagtcctacgacttcgag
gccaagatgggcgcggaggccgtcaaggaactgctcgacgacctcgacctcgaccagctg
gaggccgagctgggcgagcagatgaaggacaacagccgccacaagcgtgccaaggcccgc
aagcggctggaagtggtccgctccttcaagcgcagcggcaacaacccctcctggatgatt
ctggagacggtgccggtgatgccgcccgatctgcgcccgatggtgcaggtggacggtggg
cgctttgcgacgtcggacctcaacgacctgtaccgccgcctgatcaaccgcaacaaccgc
ctcaagaagctgatgagccagggcgcgcccgacatgatcatccgcaacgagaagcgcatg
cttcaggaagcggtggacgcgctgatcgacaacgggcggcgcggctcgcccgtcaccaac
cccggctccgaccgcagcctgcgctcgctgaccgacctgctgggtggcaagcagggccgg
ttccgccagaacctgctcgggaagcgcgtggactactcgggccgctcggtgatcgtggtg
ggtccgcaactcaagctgcaccagtgcggtgtgcccaagcgcatggccctcgaactcttc
aagccgttcctgttcaaggtgctggaggagaagggcgaggtcaccaacatcaagcaggcc
cgcaagatgctcgaacgctaccgcgacacccgcgacagcgtgtgggacgcgctggaagag
gtcatcgaggacaaggtggtgctgctgaaccgcgcgccgaccctccaccgcctgggcatc
caggccttcgagccggtgctggtcgaagggcagtcgatccagcttcaccccctcgtctgt
gaagccttcaacgccgacttcgacggcgaccagatggcgattcacgtgccgctctcggcg
caggcgcaggcggaagcgcgcatccagatgctctccgcgcacaacctgctgtcgcccgcg
aacggcgagccgaacgtgaagcccagccgcgacatcatcctcggcatcttcacgctgacg
cagctccgcaaggacaacctgggcgcggggagcgaattcgccaacgagcaggacgcgctg
aacgcgctgaacgaaggccgcgtggcgctgaacacgccgatcaccgtgaacggcgtggaa
accagccccggccgcctgaagtacgtcttctccagccccgacgaggcgatcatggccgtg
gaccgcggcgagatcgactaccaggatcacgtccgcatccgcctcaacggcacggtgtac
gacaccagcgcggggcgcgtgatgttccgccgcctggtgcaggaagctctcggcgcgcag
gggcacctggtcgatacgctggtgaacctcgacaccgcctacgagaaggatcacctcaag
gacatggtgatggcctgctacaaggagctgggcatcgaggcgacggcggggctgctggac
gccctcaaggacaacggcttcaagctgtccaccacctcgggcatcaccattggcatcgac
gacatcgtgctgccgcccaacaagggtgaactgctggccgaggccgacgagaaactcgcc
gccatcgagcagaactacgagttcggcttcatgaccgacgaggagcgttacaagcaggtc
gtgcagctctggaacgacaccacggacgaagtcaagaacgcggtgttcgagaacttcagc
cgcaactaccccttcaacccgctctggatcatgagccagtcgggtgcccgcggcaacccg
cagcagatccgtcagctcgccgggatgcgcggcctgatggcccgccccgacggcagcacc
atcgaggtgccgatcaaggcgtccttccgcgagggcctgaccgtgctggagtacttcatc
agcacgcacggcgcgcgtaagggtggggcggacaccgcgctgcgtaccgccgactccggc
tacctgacccgcaagctggtggacgtggcccacgaggtcgtcgtgcgcgacgtggactgc
ggcaccaccgactacacgatcatgccgctgggcgcgaccgacgagcgcaccggcgagtgg
cgcacccgcaagggcagcgagatcgaaacctcaatctacggccgcaccctgaccgccgac
gtggaactgcaaggcggccgcgtgatcccggcgggcgagatgctcagcctggaagacgtg
aaggcgatcaccaaggacgccaagaacatcggcgaggtgtttgtccgcacgccgctgaac
tgccgcgtccgcgcgggcgtctgccagaagtgctacggctacgacctctcacaggccaag
cctgtcagcatgggtgaagcggtgggtgtggtggccgccgagtccatcggtgaacccggc
acgcagctcaccatgcggaccttccacaccggcggtgtggcgggcggcggcgacatcacg
atgggtctgccccgcgtgatcgagctgttcgaggcgcgcaagcccaagacccaggcggtc
gtggctgaccgcgacggcgtggtccgcatcgaggaggaggaggagcgttacctcgtccgc
atcgaggccgaggacgaagccttcagctccaagaccgcgaccaagatcagcaagggcctg
cgcctgatcgtgcgcgacggcgatcacgtggaagccgggcagcccctcacgcgcggcgcc
atcaacccccacgacctgctgctgtacaaggacaccgacgccgcccagcggtatctggtg
gaggaagtgcagcgcgtgtaccgctcgcagggcgtgaaagtccacgacaagcacattgag
gtgatcgtccgccagatgctgcgttacgtggagatcaccgacggcggcgacaccgacctg
ctcgaagggcagacggtggagcgctgggaagtcgaccaggcgaacgaggccctggcggaa
ggccagacgcccgcgagctggaagccggtgctgctgggcatcaccaagagcagcctgacg
accaagagctggctgtcggcggcgtccttccagcacacgacccacgtgctgaccgaagcc
tcgatgcgcgggcaggtggacgacctgatcggcctgaaggagaacgtgattctcggcaag
ctgatcccggcggggaccggcctcaccaccgtccgcgagatgcaggtggccgacgaccgc
acgctggagaagtacggcgagggcaacgtcagccccgactcggtgacgggcacgcaacgc
tacgacgacacccgtcccgtcagcacgcccatcaaccccagctacggcgactga
DBGET
integrated database retrieval system
