Deinococcus metallilatus: E5F05_16540
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Entry
E5F05_16540 CDS
T09847
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dmb
Deinococcus metallilatus
Pathway
dmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E5F05_16540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmb03400
]
E5F05_16540
Enzymes [BR:
dmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5F05_16540
DNA repair and recombination proteins [BR:
dmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E5F05_16540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBY09405
LinkDB
All DBs
Position
complement(2183415..2186540)
Genome browser
AA seq
1041 aa
AA seq
DB search
MTVAAPNLSKLLPTAPVGNVLLLPQVARAALFAAHPGPAVLLTTPDRVATYASAGALGAP
VSVNPGLRDWDGKHEHVVLDVNTALDLFPAHPEDHALNLRVGASYPREELLNRLERLGYE
RDEEPGYVLRGDTLELRLEPGAGVPDGEDPVWIRAEFFGDELDTLRRLAPGEMTGERIQT
FTLEPTADYLTEVKWDATRLDLLPGRVFLDAPEFYASALGPLTDTLWPRLREREVTSFGR
APLDLTDFDLGLKVLPFYRARLSDLERDVDEWRGAGYRVMILVRHDRTAAYLADKLLGTH
EIPWLSVPRVEEGGLGFLRANGEGGFAIPEHRTVVLTEDLIYGFQGGSALRGKKLAGKPV
TDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRNGARLAVPIEQLPVLRR
HPGTTDDPPVLSSFDKKDWARAKEKARKNAEEVAAKLLVQYAARQVTPGNSFPPQPEWDA
QVEQNFKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEVALRAAHRVVGDGKQ
VAMLVPTTLLAEQHTSTFVERFKNLPVRVEGLSRFTNDRQAKQILADLAAGKVDIIIGTH
RLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKLEIPEGVKAVDTLAL
SATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPLTVRDAILNEIERGGKVFY
IHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETG
LDIPEANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLFYPPRMTENAQRRLWAIADL
QDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLAQAVARLKGETVETPAT
VSIDLPINARLTPEYFDGDEEARIATYGRLSEARTLQAISRVERDLRKKYGPPTPEVQNF
IDLAKLRLTAVAKRALSIGETMTHLQVTFAYKGLDYDAAGLKRFPHKTEVTTFPPSVKLE
KKGLKPDDYARTLIELLGYFG
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gtgacggtcgccgcccccaacctctccaaactcctgccgaccgccccggtcgggaacgtg
ctgttgctgccgcaggtggcccgcgcggcgctgttcgccgcccaccccggccccgccgtg
ctgctcaccaccccggaccgcgtggcgacttacgcttcggcgggggcgctgggggcaccc
gtcagcgtgaatcccggcctgcgcgactgggacggcaagcatgagcatgttgtgctggac
gtgaacacggccctggacctgttccccgcacatcccgaagaccacgccctgaacctgcgc
gtcggcgccagctatccgcgtgaggaactgctgaaccgcctggaacgcctcggctacgag
cgcgacgaggaacccggctatgtgctgcgcggcgacacgctggaactgcggctggaaccg
ggcgcgggcgtgccggacggggaagacccggtgtggattcgcgcggagttcttcggggat
gagctggacaccctgcgccgcctcgcccccggtgagatgacgggcgagcgcatccagacc
ttcaccctggaacccaccgccgactacctgacggaagtgaaatgggacgcgacccggctg
gacctgttgccgggccgggtctttctggacgcccccgagttctacgcctctgccctcggg
ccgctgacggacaccctctggccccggctgcgcgagcgggaggtgacctcctttggccgc
gcgcccctggacctgaccgatttcgacctgggcctcaaggtgctgcccttctaccgcgcc
cgcctctcggacctcgaacgcgacgtggacgagtggcgcggggcgggctaccgcgtgatg
atcctggtgcgccacgaccgtaccgccgcctatctcgcggacaaattgctggggactcac
gagattccctggctgagcgtgccgcgcgtcgaggaaggcggcctgggctttctgcgcgcg
aacggggagggcggcttcgccattcccgaacaccgcacggtcgtcctcaccgaggacctg
atctacggctttcagggcggctcggcgctacgcggcaagaagctggccgggaagcccgtc
accgacgcgctgggcctgcacgtgggcgactacctgattcaccccgagcacggcatcggg
cagtttcaggggctggagacgcgcacggtgctgggcgtcacccgtgattacctgaacctg
gaataccgcaatggcgcccgcctcgcggtgcccatcgagcaactgccggtgctgcgccgc
caccccggcacgaccgacgacccgccggtgctgtcctccttcgacaagaaggactgggcc
agggcgaaggaaaaagcccgcaagaacgcggaagaggtggccgccaagctcctcgtgcag
tacgccgcgcggcaggtcacacccggcaactccttcccgccgcagcccgagtgggacgcg
caggtggagcagaacttcaagttcgagctgacggcggaccagaaaacggcgctgaaagaa
acgatgcgcgacctcgaagccccccatcccgccgaccgcctgatctccggcgacgtgggt
ttcggcaagacggaagtggctctgcgcgccgcccaccgcgtcgtcggggacggcaagcag
gtggcaatgctggtaccgacgacgctgctggccgagcagcacacctccaccttcgtcgaa
cgcttcaagaacctgccggtgcgggtggagggcctctcgcgcttcacgaacgacaggcag
gccaagcagattctcgcggacctcgcggcgggtaaggtggacatcatcatcgggacgcac
cgcctgctaagcagcgacgtgcagttcaaggacctcggcctgatcatcgtggacgaggaa
caccgctttggagtggggcagaaggaaaagctgcgggccttgcgcggcctccccgacgtg
cccaaggacggcaagctggagattcccgagggcgtgaaggcggtggacaccctggccctc
tccgccacgccgattccgcgcaccctctacatgagcatggtcggcctgcgcgacatgagc
agtatccagacacccccgaagggccgcaagccgattcagacggtcctcgcgccattcgac
cccctgacggtccgcgacgccatcctcaacgagatcgagcgcggcggcaaggtcttctac
atccacgaccgcatcgcctctatcggcgcgcgcagcctctacctccgcaacctcgtcccc
gaagcgcgcatcggcgtggcgcacgggcgcatgaacgaggaggagctggaggagatcatg
ctgggcttcgagcagggagccttcgacgtgctgctctccaccaccatcgtcgagacaggg
ctggacattcccgaggcgaacaccatcctgatcgagcgggcggaccgtctgggcctggca
cagctctaccagcttcgcggacgtgtgggaagacggcagcagaccgcctacgcctacctc
ttctacccgccgcgcatgaccgagaacgcgcagcgccgcctgtgggccatcgccgacctg
caagacctcggctccgggcacctgctggccgaaaaggacatggaaattcgtggtgtgggc
aacatcctgggcgaggaacagcacgggcacgtgcaggccgtctccatcgacgtgtacacc
gagatgctggcgcaggccgtcgcccgcctgaaaggggagacggtggagacgcccgctacc
gtcagcatcgacctccccatcaatgcccgcctcacgccggaatacttcgacggcgacgag
gaagcgcgcatcgccacctatgggcggctgtccgaggcgcgcaccctccaggccatcagc
cgtgtcgaacgcgatctccgcaagaagtacggcccgcctacgcccgaagtccagaacttc
atcgacctcgccaagctgcgcctgaccgccgtcgccaagcgcgcgctgagcatcggggag
acgatgacgcaccttcaggtcaccttcgcctacaagggcctggactacgacgcggcgggc
ctgaaacgcttcccccacaagacggaggtgacgaccttcccgccgagtgtgaaactggaa
aagaaggggctgaagccggacgattatgcgcggacgttgattgagttgctggggtatttc
ggttga
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