Deinococcus metallilatus: E5F05_18230
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Entry
E5F05_18230 CDS
T09847
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dmb
Deinococcus metallilatus
Brite
KEGG Orthology (KO) [BR:
dmb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmb03032
]
E5F05_18230 (topA)
03400 DNA repair and recombination proteins [BR:
dmb03400
]
E5F05_18230 (topA)
Enzymes [BR:
dmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E5F05_18230 (topA)
DNA replication proteins [BR:
dmb03032
]
Prokaryotic type
DNA Topoisomerases
E5F05_18230 (topA)
DNA repair and recombination proteins [BR:
dmb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E5F05_18230 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QBY09701
LinkDB
All DBs
Position
complement(2521663..2524581)
Genome browser
AA seq
972 aa
AA seq
DB search
MSRTLVIVESPAKARTIEKYLGKGYAVESSIGHIRDLPRSAADIPEKYKGKAWARLGLDI
EDDFRPLYVVSPEKRQHVARLRKLAAEADEIILATDDDREGESIAWHLYQELRPRVPVKR
MVFHEITREAIQQAIEHPRAIDTNLVEAQEARRALDRLYGYEVSPVLWKKVAPKLSAGRV
QSVATRMLVERERERMRFVSGTWWDLLVTAATAEGATFPARLTDVAGQRLATGKDFDPLT
GKLKKGAEVRLLDEAAALALAEGLKGQPLTVTSAEEKPFTQRPYPPFITSTLQQEGSRKL
GFAATRTMRAAQRLYEQGYITYMRTDSTNLSGEAVNAARTQVKAMYGEAYLSPQPRVYAK
KAKNAQEAHEAIRPAGSSFRTPDSLRSELSGDEWRLYDLIWKRTVACQMADARGRSLRVR
LAGTAVTGEVVGLSASGRTIDFPGFLRAYVEGSDDPTAALEDRETPLPPLKEGQRVTAEG
VKPEGHETQPPARYTEASLVQALEAAGIGRPSTYASILGTIQDRGYAVKKGQALVPTWTA
FATSALLEHHFGRLVDYDFTAKMEEDLDDIAGGREHRVPYLRRFYLGEGGEGMALRPLID
SKMGEIDARGIATIAVPRLEGSGIEVRVGRYGPYMQRGEQKANLPDDLAPDELTFEKAEE
LMSRPTGDRVIGTDEASGQPVVARAGRYGPYVTLGEGNPPIRSASLFPGDDLNTITLERA
LRLLSLPRLVGVSEGEEIWAQNGKFGPYLKRGNDSRSLATHEQLFTVSLPEAEALFMQPR
FRARGTAAAPLKTFEYEGRAPILLKSGRYGPYLTDGERNATLRKGEDEANLTAERALEIL
EERGKAPQKKAGQQKAGQKKAAKPARAGAKAGTKAAPKKTATKTGMAQKAAAPRKAATPA
APKTTAKPTFTWADLKPHLGVLSEPERALVTATREQGRKVEDVAPALGLDVKKAKGMALQ
ASKKLNQAARGA
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaccctcgtgatcgtcgagtcgcccgccaaggccagaaccatcgagaagtac
ctcgggaaggggtacgcggtggagtcctccatcgggcacattcgcgacctgcccaggagt
gccgccgacatccccgagaagtacaagggcaaggcctgggcacgcctcggcctggacatc
gaggacgacttccggcccctgtacgtcgtgtcccccgaaaaacgccagcacgtcgcccgc
ctccgcaagctggccgccgaggccgacgagatcatcctcgccaccgacgacgaccgcgag
ggcgagagcatcgcctggcacctctatcaggaactgaggcccagggtgccggtcaagcgg
atggtcttccacgagatcacccgggaagccattcagcaggccatcgaacatccccgcgcc
atcgacaccaatctggtagaggcgcaggaggcccgccgcgccctggaccgcctctacggc
tacgaggtcagcccggtgctgtggaagaaggtggccccgaagctcagcgcgggccgcgtg
cagtcggtggcgacccggatgctggtcgagcgcgagcgcgagcggatgcgtttcgtgagt
gggacgtggtgggatctgctggtgacggcggcgacggcggaaggcgcgaccttccccgcc
cgcctcaccgacgtggccgggcagcggctggcgaccggcaaggacttcgaccccctgacg
ggcaagctgaagaagggggccgaggtgcgcctgctggacgaggcggcggcgcttgccctg
gcggaaggtctgaaaggacagcccctcaccgtcaccagcgccgaggaaaagcctttcacg
cagcggccctacccgcccttcatcacctccacgctccagcaggaggggagccgcaagctg
ggctttgctgccacccgcaccatgcgcgcggcgcagcggctctacgagcaggggtacatc
acctatatgcggaccgactccaccaacctctcgggtgaggcggtgaacgcagcccgcacc
caggtgaaggcgatgtacggcgaggcctacctcagcccgcagccgcgcgtgtacgcgaaa
aaggccaagaacgcccaggaggcgcacgaggccatccgtcccgccgggagcagcttccgc
acgcccgattccctccgcagcgaactctccggcgacgagtggcgcctctacgacctgatc
tggaaacgcacggtggcctgccagatggccgacgcgcggggccgcagcctgcgggtgcgc
ctggcgggaacggcggtgacaggtgaagtcgtgggcctgagtgcctctggccgcaccatc
gacttccccggcttcctgcgcgcctacgtggaaggtagcgacgaccccaccgccgccctc
gaagatcgcgagacgccgttgccgccgctgaaggaaggccagcgcgtgaccgccgagggc
gtgaaacccgaaggccacgagacgcagccgcccgcccgctacaccgaggccagcctggtg
caggcgctggaggccgccggaatcggccgcccctccacctacgcgagcatcctgggcacc
attcaggaccggggctacgcggtcaagaaggggcaggcgctcgtgcccacctggaccgcc
ttcgccacctcggcgctgctcgaacaccacttcgggcggctggtggactacgacttcacc
gcgaagatggaagaggacctggacgacatcgcgggtgggcgggaacatcgcgtgccgtac
ctgcgccgcttctacctgggcgagggcggcgaggggatggccctgcggcccctgatcgac
tccaagatgggtgagatcgacgcgcgcggcatcgccaccatcgctgtgcccaggctggaa
ggcagcggcatcgaggtccgggtgggccgctacggcccgtacatgcagcgcggcgaacaa
aaggccaatctccccgacgacctcgcgccggacgaactgacctttgagaaggccgaggag
ctgatgagccgccccaccggggaccgcgtgatcggcaccgacgaggccagcgggcagccc
gtggtggcccgcgccggacgctacggcccttacgtcacgctgggcgagggcaatccgccc
atccgctccgccagcctgtttcccggcgacgatctgaacacgattacgctggagcgggcg
ctgcgcctgctgagcctcccgcgcctggtgggggtgtcggagggcgaggaaatctgggcg
cagaacggcaagttcggcccctacctgaagcgcgggaacgactcgcgcagcctcgccacg
cacgagcaactcttcacagtgtcgctgccggaggccgaggcgctcttcatgcagccgcgg
ttccgggccagggggacggccgccgcacccctgaagaccttcgagtacgagggccgtgcc
cccatcctgctgaagtcgggccgctacgggccttatctgaccgacggcgaacgcaatgcg
accctccgcaagggcgaggacgaggcgaacctgaccgccgaacgcgccctggagattctg
gaagaacgcggcaaggcgccccagaaaaaagcgggacagcagaaggccgggcagaagaag
gcggcgaagccagcccgtgccggagcgaaggcgggcacgaaggccgcccccaaaaagacc
gccacgaaaaccggcatggcccaaaaggccgccgccccccgcaaggcggccaccccggcc
gcgccgaagacgaccgcgaaacccaccttcacctgggccgacctcaagccgcacctgggc
gtcctgagcgagccggaacgcgcgctggtgaccgccacccgcgagcagggccgcaaggtg
gaggacgtggcgcccgcgctggggctggacgtgaagaaggcgaagggcatggcgcttcag
gccagcaagaaactgaaccaggcggcgcggggagcgtag
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