Deinococcus metallilatus: E5F05_20535
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Entry
E5F05_20535 CDS
T09847
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dmb
Deinococcus metallilatus
Brite
KEGG Orthology (KO) [BR:
dmb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmb03016
]
E5F05_20535
Enzymes [BR:
dmb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E5F05_20535
Transfer RNA biogenesis [BR:
dmb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E5F05_20535
Prokaryotic type
tRNA splicing ligases
E5F05_20535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QBY10119
LinkDB
All DBs
Position
2967111..2968514
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AA seq
467 aa
AA seq
DB search
MNGKHITKLGFEKRAVKLALAAAEAREEAGLSRAEILDELQAVQANPQAYLTGGVYADLA
AELTAQGAARQVRKSAELRPTPLPYRIWGDDLIEPGARSQMDVAMQLPISRAGALMPDAH
VGYGLPIGGVLATEDAVIPYGVGVDIGCSMRLSVLPLKPESLSTDEARKLLLKHTRFGAG
VSFEKAFRGDHEVLHEQTWREQPLLRHLYDKAAEQIGTSGSGNHFVEFGTLTLPGDDLGL
PAGEYLAILSHSGSRGFGAQVANHYTKLAQALHPSLDPAARKLAWLPLDSEEGQGYWQAM
NLAGRYALANHDLIHARLARALGVQPLASVGNSHNLAWQQRVEGHDLIVHRKGATPAKQG
QLGLIPGSMADPGFVVRGLGHEGALASASHGAGRQMGRKAAANTLAKRDVQAYLKERGVT
LIGGGIDEAPQAYKRIEDVLERQNDLVDVVARFTPRVVRMDTGSEDV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaaaacacatcaccaaactgggcttcgagaagagggcggtgaagctggccctg
gccgccgccgaggcgcgcgaggaagcgggcctcagccgcgccgagattctggacgaattg
caggcagtgcaggccaacccccaggcgtacctgacgggcggcgtctatgccgacctcgcg
gcggaactgaccgcacagggagcggcgcggcaggtccgcaagagtgccgagctgcgccct
acccccctcccctaccgcatctggggcgacgacctgatcgagccgggggcccgctcgcag
atggacgtggcgatgcagctccccatctcccgcgcgggggccctgatgcccgacgcgcac
gtgggctacggcctccccatcggcggcgtgctggcgaccgaggacgccgtgattccctac
ggcgtgggcgtggacatcggctgttcgatgcggctgagcgtgctgcccctgaaaccggaa
agcctcagcaccgacgaggcccgcaagctgctgctgaagcacacccgcttcggcgcgggc
gtgagcttcgagaaagcttttcggggcgaccatgaagtgctgcacgaacagacctggcgc
gagcaaccgctgctgcgccacctctacgacaaggccgctgagcagatcggcacgtcggga
agcgggaatcatttcgtggagttcggcaccctgacgctgccgggggacgacctgggcctc
ccggcgggcgaatacctcgccatcctgtcccacagcggctcgcgcggcttcggggcgcag
gtggcgaaccactacacgaagttagcgcaggcgctccaccccagcctcgaccccgccgcc
cgcaagctcgcctggctgccgctggacagcgaggaaggccagggctactggcaggcgatg
aacctggccgggcgctacgccctcgccaaccacgacctgatccacgcccgcctcgcccgc
gcgctgggggtgcagccgctcgccagcgtcggcaacagccacaacctcgcctggcagcag
cgggtggaggggcatgacctgatcgtccaccgcaagggtgccacgcccgccaaacagggc
cagctcggcctgattcccggcagcatggccgaccccggtttcgtggtgcgcggtctgggc
cacgaaggcgcgctcgccagtgccagtcacggcgcggggcgccagatggggcgcaaggcc
gccgcgaacaccctcgccaagcgggacgtgcaggcgtacctgaaagagcgcggcgtgacc
ctgatcggcggcggcattgacgaggccccacaggcctacaagcgcatcgaggacgttctg
gaacggcagaatgatctggtggacgtggtggcgcggttcacgcccagggtggtgcggatg
gacacgggaagcgaggacgtgtag
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