Dehalococcoides mccartyi BTF08: btf_1285
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Entry
btf_1285 CDS
T02475
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dmc
Dehalococcoides mccartyi BTF08
Pathway
dmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
btf_1285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmc03021
]
btf_1285
03019 Messenger RNA biogenesis [BR:
dmc03019
]
btf_1285
Transcription machinery [BR:
dmc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
btf_1285
Messenger RNA biogenesis [BR:
dmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
btf_1285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
nSTAND_NTPase5
OB_RNB
ATPase_2
Spore_III_AA
AAA
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGG08359
LinkDB
All DBs
Position
complement(1183782..1185056)
Genome browser
AA seq
424 aa
AA seq
DB search
MEIGQFELSELEKKTREELLDIAKEMGINGVTALKKQDLVMRLIQVYTESQGNVFCSGIL
EIMPDGYGFLRQASLLPSSSDIYVSQSQIRRFGLRTGDMVIGQGRPAKPGEKYYSLLRVE
AINDLNPEMAKRRPNFGALVPTFPDRLINLETTPTELATRLINLIAPIGRGQRGLIVSPP
KAGKTTILKNIANATATNYNDIHIMVVLIGERPEEVTDMRRHVRGEVMAATFDEPVENQT
RVAELALERAKRMVESGKDVFILLDGITRLTRAYNLAMPSSGRTLSGGIDPVALHPAKKF
FGAARNTEEGGSLTIIATCLVETGSRMDDLIYEEFKGTGNMELHLERRLAERRVFPALDI
PRSSTRREELLLGENYKQVQLLRRMVAIIADDANHYTEVNERLLDRLRRSKNNADFLANL
QKEM
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcggacaatttgaactgagtgaacttgaaaagaagactcgcgaagagcttctg
gatattgccaaagaaatggggataaacggggtaactgcccttaaaaagcaggacttggtg
atgcgccttattcaggtttataccgaatcccaggggaatgtattttgttcgggtattctg
gaaataatgccggacggatacggattccttagacaggcatctctcctgcccagctcatca
gacatatatgtgtctcagtcccagatacgccgtttcggacttcgcaccggtgatatggta
ataggccaagggaggccggccaagccgggtgagaaatattacagccttttgcgggtggaa
gctatcaatgaccttaaccccgaaatggccaaacgccgcccgaatttcggtgccttggtt
cccacctttcctgaccgcctgataaatctggaaaccacccccaccgaactggccacccgc
ctcataaacctgatagcccccataggcaggggacagcgcggtcttattgtttccccgccc
aaggccggcaagaccaccattttgaaaaacatagctaatgccaccgctaccaattataac
gatatacacataatggtagtccttataggcgaacgccctgaagaagtaaccgatatgcgc
cgccacgtgcggggcgaggtaatggccgccacctttgacgaaccggtagaaaaccagacc
cgggtagccgaactggcactggaacgggccaagcgcatggtagagagcggcaaagacgtc
tttatcctgctggacggcattacccgccttacccgtgcctacaacttggccatgccctca
tcaggccgcaccctttccggcggtattgacccggtagccctccaccccgccaagaaattc
ttcggggcagcccgcaataccgaagagggcggttcgcttaccatcattgccacctgtctg
gtagaaaccggcagccgcatggatgaccttatttatgaagagttcaaaggcaccggcaat
atggaacttcatctggaacgccgtttggccgaacgccgtgtattcccggctttggatata
ccccgctcaagcacccgccgtgaagagcttctgctgggtgaaaactacaagcaggtacag
cttttgcggaggatggtggctatcatcgctgatgacgccaaccactatacagaggttaac
gagcgcctgctggaccgcctgcgccgctccaagaataatgctgacttcctggctaatctc
cagaaagaaatgtaa
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