Dehalococcoides mccartyi BTF08: btf_1340
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Entry
btf_1340 CDS
T02475
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dmc
Dehalococcoides mccartyi BTF08
Pathway
dmc03030
DNA replication
dmc03430
Mismatch repair
dmc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
btf_1340 (dnaE)
03430 Mismatch repair
btf_1340 (dnaE)
03440 Homologous recombination
btf_1340 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmc03032
]
btf_1340 (dnaE)
03400 DNA repair and recombination proteins [BR:
dmc03400
]
btf_1340 (dnaE)
Enzymes [BR:
dmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
btf_1340 (dnaE)
DNA replication proteins [BR:
dmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
btf_1340 (dnaE)
DNA repair and recombination proteins [BR:
dmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
btf_1340 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AGG08409
LinkDB
All DBs
Position
complement(1227749..1231261)
Genome browser
AA seq
1170 aa
AA seq
DB search
MFCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKP
ILGSEFYLAYGDRTAKTAADKNYYHLVLLAKNNKGYHNLIQLSSRSHLEGFYYKPRIDKE
LLEKYSEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTFENYYIEIQRHPMPDLEK
INSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKMEGEYFYL
KSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKGKTPDEYLADLCYEG
LPVFYPDAGPEILDRLKYELDVIKTTEFANYFLVTWDIIRFVKEKGLYYGVRGSAASSIV
LYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDRREEVIEYVVGKYGRDHVSQI
ITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLDKAMEESSELKEMYNQDAV
VRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRLSKENNLGLVMTQYTMEDIA
KIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLDDQKTFELLAAGETVGVFQL
EGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKSKHGLEPITYPHPALEPLLE
ETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAVMQKQKANFVDGAMKNGYTR
EIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYPVEYITAYLQAFCDVTEKVV
TAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGLAAIKNVGVAAVEPIVAERK
ANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMGDRGTLFFNLPNILSLAQREQKM
KDSNQTTMFDLFSQQSPVPMTNLELEESPVTTREKLQWEKELVGIFISEHPFTPYASSAL
EVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPFVMAEIEDLVGRVEIAAWPKVY
NATKALWEEGNILLVEGKAVVRGDRVSIHAEKVSRYQPETEKKAAPVFINAPQPKSEEKE
PPAPQLQRLVVCIQQTENEERDIDCLNEVVETLRQYTGETEVRLCVVNHERVFILKMPDI
WVYYCPELKNKLAALVGSANVRLENNAPSG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgttttgtcatcttcatgtccacaccgaattcagcctgctggacggcatgtgccgtatt
tcccagctggtagtccgcgccaaggaacttggcatggaggcactggctattactgaccac
ggcactatgcatggcattccccgtttttacaaagaagccaaagaggcaggcataaaaccc
atactgggcagcgaattttatctggcatatggtgaccgcaccgccaaaactgcggcagac
aaaaactactaccatctggtactgctggctaaaaataacaagggctaccataaccttatt
cagcttagctcgcgttcgcatctggagggcttttactacaaaccccgtatagataaagaa
ctgcttgagaaatattcagaagggctggtttgcctttcggcctgcccgtcgggtgaagta
ccccgcctgatactggaaaaccgctatgatgaggccagagaagccgccctgtggtacaag
aaaacttttgaaaactactatatagaaatccagcgccaccccatgcctgatttggaaaag
ataaacagcgtccttatacctatggcacgggagctggatattcccttggtagctaccaac
gatacccactatctggacaaggaagatgccccctaccatgatttgctgctttgtataggc
acaaatgcactggtcagtgatgaaaagcggatgaagatggagggggaatatttttacctg
aaatcccctcaggaaatggcggaagcctatcaagatatacctgatgctattgaaaacacc
gccaaaatagctgaaatgtgtaatgtcagcctggacttcgggcgtctgcacctgccggag
atagatatacccaaaggcaaaacccctgatgagtatctggcagacttgtgctatgaagga
ctgccagttttttaccctgatgccggcccggagatacttgaccgcctgaagtacgaactg
gatgttatcaaaaccaccgagtttgccaattactttctggttacctgggatatcatccgt
tttgtaaaagaaaaagggttgtattatggtgtccgtggcagtgccgcttcgtccatagtg
ctttactgtctaggcataaccgcccttgaccccatcagatacaaactggtttttgagcgt
tttctgaatattgaacgcaaggaaatgcctgatattgatatggactttcaggatgaccgc
cgtgaggaggttattgaatacgttgtcggcaagtacgggcgtgaccatgtttcccagatt
attacctttggtacgctgggggcaaaagcggccgtgcgggatgtgggacgggcacttggc
atggcctatgccgatgtggatagggtagccaaggttatacctttctcccctcacatgact
ctggacaaggctatggaagaaagctccgagctcaaggaaatgtacaatcaagatgccgtt
gtccgcaatctggtggatgccgcccgcaaggtggagggtctttcccgtcatgcttccacc
catgctgccggcgtagtcatttccaaagaccccttgacagaccatgtacccctgcagcgc
ctcagcaaggagaataatctggggctggtcatgacccagtacaccatggaagacatagcc
aaaataggtttgctcaagatggactttctgggtttggtcaacctgaatatactgggcaag
gcctgtgcggtaatcaaagaatacaccggacaggatatcgaccccttggccatacccctt
gacgaccaaaagacctttgaactgctggcagccggcgaaacagtgggtgttttccagctg
gaaggtacgggtatgcgccgctatatcaaagaactgaaaccgacagtgttttcagatatt
ggtgctatggtggctttgtaccgccccggccctatggagcagataccccgttttatcaaa
tccaagcatgggcttgagcctatcacctatccacaccccgcacttgaacccctgctggaa
gaaacttacggggttattgtctatcaggagcaggttctcttcatagcccagaccttttcc
ggctatactctggggcaggcggatatactccgcaaggccatgggtaaaaagattgccgcc
gttatgcagaagcagaaagccaactttgtggacggggccatgaaaaacggctatacccgt
gagatagccgatgaggtatttgctctggttgaaccttttgccgggtatgcctttaacaag
gcccatgctaccagctatgctcttatcgcctatcagacagcctacctcaaggctaattac
ccagtggaatatataaccgcttatcttcaggctttttgtgacgtgaccgaaaaggtggta
accgccgttaccgaagcccgccatatggggatagaagtattgccgccggatattaaccgc
agcggggctaattttgagatagaacaagctgaaggcggggttaaaaaaatccgcttcggg
ctggcggctatcaagaatgtgggtgtggcggcggtagaacctattgtggccgaaaggaaa
gccaacggggactatctgtctgtggaggatttatgccgcagggccgagggttcatcactt
aacaagcgggtgatggaaagtctggttaaggccggggctttggataatatgggtgaccgg
ggaacgctcttttttaatttgccgaatatactttcgttggctcagcgggagcagaagatg
aaagattcaaaccagactactatgtttgaccttttcagccagcaatcacccgtacccatg
actaatctggagcttgaagaatcaccggttaccacccgtgaaaaactccagtgggaaaaa
gagctggtaggtatatttatatctgagcatccgtttaccccctatgccagttcggctttg
gaggtaactaccgccctgtgcggccagatagatgaggaactccacaatcagctggttaca
gtggcgggtatggtggcttcggtgcgggtttcggccacccgcgaaggcaaaccgtttgtt
atggccgaaattgaagatttggtaggacgggtggaaatagccgcctggccgaaagtttat
aacgcaaccaaggccctctgggaagaggggaatattcttttagtggaaggtaaagctgtg
gttcgtggagacagggtatcaattcatgccgaaaaagtaagccggtaccagccggaaaca
gagaagaaagcggcaccggtatttataaatgccccccagccaaaatcagaggaaaaagag
cctccggctccccagctgcagcgtttggtggtatgtatccagcaaactgaaaatgaggaa
cgggatattgactgcctgaacgaggtggtggaaaccctgcggcaatatacgggtgaaacc
gaagtacggttgtgcgtggtcaaccacgagagggttttcatattgaaaatgcctgatatc
tgggtatactattgtccggagctaaaaaataagcttgctgccctggtgggcagtgccaat
gtgaggttggagaataatgccccaagcggataa
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