Dehalococcoides mccartyi BTF08: btf_566
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Entry
btf_566 CDS
T02475
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dmc
Dehalococcoides mccartyi BTF08
Pathway
dmc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dmc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
btf_566 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmc03021
]
btf_566 (rpoC)
03400 DNA repair and recombination proteins [BR:
dmc03400
]
btf_566 (rpoC)
Enzymes [BR:
dmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
btf_566 (rpoC)
Transcription machinery [BR:
dmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
btf_566 (rpoC)
DNA repair and recombination proteins [BR:
dmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
btf_566 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGG07671
LinkDB
All DBs
Position
534945..538832
Genome browser
AA seq
1295 aa
AA seq
DB search
MNEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFEC
ACGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNL
STRSLERIIYYSHFIITAVNDEARAKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATV
EAINQIRRDFSTEREQMEEDIQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGAE
ALLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLS
QCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLLN
RAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETM
LSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIIDL
RAIIKVRDGKGNMLETTTGRIIFNDVLPKAVEFQNMDIPKSAIKKIIGRCYKILSSQDMA
VMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAADERTAIAEGQFARGLITEDER
YNSIIETWMETTDRITDAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRGLMTNPSGR
IIDFPIKSSLREGLTALEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQED
CGTANGTWIIEPKEKGMLPPLVDRILGRWTAHNVVHPQTGEIIVDNNEEIDEIKAKAIGE
AGITEVFVRSPLTCESTHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRT
FHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRIASDEVYQ
DEYELPSGWKTQVQSRQWVDSGMVLASPELEGKSKAVVQSDQNVVARVAGEVTIEGNLIT
IKYSESEEREYTIPAAMQIKVKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEV
QKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGG
EPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIGKLI
PAQCKSCKEATIERAERIAAAASAPAMSGLPENCL
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttaacgattttgatgctatacggatttcactggcttcccctgaccagata
agaagctggtcttatggtgaggttaccaaacctgaaaccataaactaccgtactttgaaa
ccggagcgggatggtttattctgtgagcgcatttttggccctatcaaggactttgagtgt
gcctgcggcaagtacaaacgtatccgctacaagggtattatctgtgacaagtgcggcgtg
gagattgcccgtgccaaggtacggcgtgaacggatggggcatattgaattggcttgtccg
gtaggccatatctggtttacccgcggcattcccagccgggttggcttgctgcttaacctt
tctacccgcagtcttgaaaggataatttattattcgcatttcattatcactgcggtaaat
gatgaagcccgtgcaaaggctatcaaagaccttgaggttatctcatcccagagggtagca
gacaagggcagtgaagtagatactcgggtagcccaaatggaagctgaagatgctactgtt
gaagctataaaccagattcgccgtgacttctcaaccgaacgagagcaaatggaagaagat
atccagttgcttatagaccagctgaaagatctgcaaaagggcaatctgctgaccgaaaac
cagtattacgaactgaaacaacgtttcagcaatgtttttgaggcatctatgggtgctgaa
gccctgctgaaactactttcatatattgatatggacaaggaacggagcaaacttattcag
gaaacccgctccacttccggccagcgccgcaaaaaggccggcaaacaactccagctggta
gaagccttccgccgttccagcaacaaacctgaatggatgataatgactgttctgccggta
ctgccgccagaccttcgtcccatggttcagcttgatggcggccgttttgccaccagtgac
ctgaatgacctttacagaagggttattaatcgtaacaaccgtctccagcacctgatggaa
atcggggcgccggagattattatccgcaacgaaaagcgtatgcttcaggaagcggtagat
tcgcttattgataacggacgccgaggcaagagtgtagctgtaaatggtgaccacaaggcc
aaatccctttccgacctgcttcgcggcaaacagggacgcttccgccagaacctgctgggt
aaacgggttgattactctggtcgttctgttatcgtggtagggccttcgctcaagctttca
cagtgcggtttgccccgccgtatggcgctggagctgtttaagccctttgtcatgcaccgt
ctggtacgggatgggttagcccccaatatcaagagtgcccgccgtttggtagagcgtgcc
cgcccggaggtttatgatattttggaagaggtagtcaaggacaggccggttctgttgaac
cgcgctcctactttgcatcgccttagtatccaggcctttgaaccggtacttatagacggc
agcgccctcaggcttcacccgctggtctgttcagcctttaatgctgactttgacggtgac
cagatggctgtccacgtgcctctttccaaagcggccgtgaaggaagcccgggaaaccatg
ctttctattcataatatgatgcttccctccagtggtgaaccggtagtatctcccagcctt
gacatggtctttggctgttactacctgaccaccactcgtccgggtgccaagggtgagggt
aaaatattcggtgactttgaagaagccaaacgttattatgaaatgggcatcattgacctg
cgggctattatcaaagtccgggacggcaagggtaatatgctggaaaccactaccgggcgg
attatctttaatgatgtcctgcccaaggctgtagagttccagaatatggatatacccaaa
tccgccattaaaaagattatcggacgctgttacaagatactttccagccaggatatggct
gtcatgctggacaagataaaagaactgggtttcaaatttgctaccagttccggtatttcc
atcgccatgagtgatatttcagtaccgcgtgaaaaaactaagctggtagccgccgctgat
gagcggactgccattgccgaaggtcagtttgcccgcggccttatcaccgaggacgaacgc
tacaacagtattattgaaacatggatggaaactactgaccgcattactgatgctattcag
gcgggctttgacaaacagggttctgtttacatgatggctaactctggtgccaagggtaat
atttcccagatacgccagatggctggtctgcgcggtcttatgactaatccttccggccgt
atcattgacttccccatcaagtcttccctgcgtgaaggtttgacagccctggagtacttc
atatccacccatggtgcccgtaagggtttggcggataccgctttgcgtacttccggttca
ggttacctgactcgccgccttatagacgtaactcaggatgttattattcttcaggaagac
tgcggcactgcaaacggcacctggattatagaacccaaagaaaagggtatgttgccgccg
ctggttgaccgcatacttggccgctggacggctcataatgtggttcacccccagactggc
gaaattatcgtggataacaatgaagagattgatgaaatcaaggctaaggctatcggcgaa
gccggtattaccgaggtatttgtacgctctcctcttacctgtgagtccactcacggcatg
tgccgccgctgctacgggcgtgatcttggtcgtgttcgtctggtagatatgaataccgca
gtcggtattattgccgcccagagtatcggtgaacctggtacccagctgacacttcgtacc
ttccacaccggcggtgtggtaggcgtagatatcactaccggtcttcccagagttgaagaa
ctttttgaggcccgtccgcccaaagttcagtctattatctccgagatagacggtgtggta
gaggttattgaaaatgaaaatggccgccatatccgcatagcctcagatgaagtctatcag
gatgaatacgaattgccttccggttggaaaactcaggttcaaagcagacagtgggtagat
tccggtatggtattggcttcacctgaactggaaggtaaatccaaggcagttgttcagagt
gaccagaatgtggttgccagagtggccggtgaagttaccatagagggtaatcttattacc
atcaagtacagcgaaagcgaagaacgggaatacaccatacctgccgctatgcagataaag
gttaaaaccggggataccatccgtgccggacaacagctgactgacggctcaataaacccg
caggatattctgtccattttgggcagagatgctgttcagaaatatctggttgaagaagtc
cagaaggtttactactctcagggtgtacatattaacgataagcacatagaggttattgcc
cgccagatgcttatcaaggtacgtattgattcttccggtgatacagaccttgttccgggt
gaactggtagacaagttccgctacgaggatatcaatgccaaggttctggccgaaggcggc
gaaccggcaactgctcacaccgtacttatgggcattacccgtgcctcccttagcactgaa
agctggctggctgcggcttccttccaggaaaccacccgcgtgcttactgatgccgctatt
tatggcagagtagacaagctatccggcctgaaggaaaatgttattattggtaagcttatc
cctgcccagtgcaagtcctgcaaggaagctactattgaaagggctgaacggatagctgcg
gccgcttctgcacctgccatgagcggtctgccggagaattgcctctag
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