Dehalococcoides mccartyi DCMB5: dcmb_1060
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Entry
dcmb_1060 CDS
T02476
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Pathway
dmd03420
Nucleotide excision repair
dmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
dcmb_1060
03430 Mismatch repair
dcmb_1060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmd03400
]
dcmb_1060
Enzymes [BR:
dmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
dcmb_1060
DNA repair and recombination proteins [BR:
dmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
dcmb_1060
MMR (mismatch excision repair)
Other MMR factors
dcmb_1060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_11
ResIII
CarD_TRCF_RID
DEAD
Motif
Other DBs
NCBI-ProteinID:
AGG06660
LinkDB
All DBs
Position
complement(1011419..1013635)
Genome browser
AA seq
738 aa
AA seq
DB search
MQDILTGLNPAQKKAVEAVEGPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF
TNKAAREMETRLNQLAPSAVGRLTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSL
IKQAMAELELDPKRYPPASIKNAISQAKSQLVLPAYYFEKGRSYFEEMVGRVYELYEKRL
KQNKALDFDDLLLKVVQLFKQYPEVLAGYQERYLHVMVDEFQDTNLVQYELVKMLSAKYR
NICVVGDPDQSIYSWRSADLRNVFNFETDNPGAKVVLLEQNYRSTKNILEAASCVIAPNS
GRKPISLWTENESGQPIAVVETFNEQEEAQFVVSEIEKLTRYEKFSPGDIAILYRTNAQS
RALEEAFIRYGMPYRLVSGTRFYQRREVKDIVAYLRLLQNPQDSVSLQRVINIPTRGIGA
KTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSRGLKPLIDFGALLKSLIIDAQTLP
LLNLLDRLLEGISYREFLFASEDGEERWDNILELRTVAQQYQEILPPEGLSAFLESVALV
SDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGMEEGVLPHNRSFDDPAQMQEERRLCYV
GVTRAKKRLYLVRAFRRSLMGQSNVNEPSRYLKDIPQSITKGREKQPLLGQQTPGQAVLP
VIKQHVQSAGMPVKSAPSPAPKLLELEAGDRVLHPQFGEGIVTSINRMKNDAEVMISFHS
VGMKRLLLSFARLTKLEN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacatactaacagggctaaaccccgctcaaaaaaaggccgttgaagccgtggaa
gggccggtgcttatactggccggtccgggcagtggtaaaactagagttattacccaccgg
attgcctacctgataaaagtagtaggtataactccccaccgcattatggctgttactttt
accaacaaagccgcccgcgaaatggaaacccgcttgaaccagctggctccttcagcggtg
ggacgcctgaccatgggtactttccacgctatttgtgcccgcatactaaggcaggacggt
cttcctctgggtgtgccgtctgactttgtgatatacgatgatgacgaccagcagagcctt
ataaagcaggccatggctgagcttgagcttgacccgaaacgttatccgcccgcttccata
aaaaatgctatcagccaagccaaaagccagctggtgcttccggcctattactttgaaaag
ggcagaagctattttgaagagatggtaggcagggtttatgaactctatgagaaacgcctc
aagcagaacaaggctttggattttgatgaccttttgttaaaggttgtccagctttttaag
caataccctgaggtgctggccggataccaggaacgctatctgcatgtaatggtagatgag
tttcaagataccaatctggttcagtacgaactggtcaagatgctttcagccaagtaccga
aatatctgtgtggtgggtgaccctgaccagtctatttattcatggcgttctgcagacctt
agaaatgtttttaactttgagactgataatccgggtgcgaaagtggttttgcttgagcag
aactatcgctccactaaaaatattctggaagcagcttcatgtgttattgccccgaacagc
ggacgcaagcctatcagtttgtggaccgaaaacgaatccggccagcctatagctgtggtg
gaaacctttaacgaacaggaagaagcccagtttgtggtttctgaaattgagaagctcacc
cgctatgaaaagttcagccccggagatatagctattctctaccgcaccaacgcccagtcg
cgggctttggaggaagcttttatccgttacggcatgccttaccgtctggtttccggcact
cggttctaccagcggcgcgaggttaaagatattgtggcctatctgcgtttacttcaaaac
ccgcaagatagcgtcagcctccaaagggttataaatatacccacccgcggaataggggct
aaaaccctttcagaccttgcccagtttgccagagagcaggatataagtctctaccagtca
cttataaatttgtcagatgaaaatgcccccaaaccgccaatacccagccgcggtttgaaa
cccctgattgattttggggctttgctgaaatcactcatcattgatgctcaaaccctgccc
cttttaaacctgctggacaggctgcttgagggtataagctaccgtgaatttctgtttgca
tccgaagacggagaggaacgctgggataatatacttgagttgcggactgttgcccagcag
tatcaggaaatactcccgcccgaagggctttcggcctttctggaaagtgtggcactggtc
tcggatttggatagccttgaagaaggtgtttcggcagttacccttatcaccttgcatcag
gctaaagggctggagtatccggtggtttttatggtgggtatggaagagggtgtcttgccc
cacaaccgttcgtttgatgaccctgcccagatgcaggaagaacgccgtctgtgctatgtg
ggtgtaacccgtgccaagaaacgcctttatctggtgcgggctttccgccgctcacttatg
gggcagagcaacgtaaatgaaccttcccgttatcttaaagacatacctcaaagcattacc
aaaggccgtgaaaaacagcctctgcttgggcagcaaacccccggacaggcggttttgcct
gttataaaacagcatgtgcaaagtgcgggcatgcccgttaagtctgccccgtctcctgcc
cccaaattactggaattggaagcgggtgacagagtgctgcacccccagtttggcgaaggg
attgtgaccagtatcaaccggatgaaaaatgatgccgaggttatgatatctttccattct
gtcggcatgaagcgcctgctgctcagttttgcccgcctgaccaaactggaaaactaa
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