Dehalococcoides mccartyi DCMB5: dcmb_1249
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Entry
dcmb_1249 CDS
T02476
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Pathway
dmd03030
DNA replication
dmd03410
Base excision repair
dmd03420
Nucleotide excision repair
dmd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
dcmb_1249 (polA)
03410 Base excision repair
dcmb_1249 (polA)
03420 Nucleotide excision repair
dcmb_1249 (polA)
03440 Homologous recombination
dcmb_1249 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmd03032
]
dcmb_1249 (polA)
03400 DNA repair and recombination proteins [BR:
dmd03400
]
dcmb_1249 (polA)
Enzymes [BR:
dmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
dcmb_1249 (polA)
DNA replication proteins [BR:
dmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
dcmb_1249 (polA)
DNA repair and recombination proteins [BR:
dmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
dcmb_1249 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
dcmb_1249 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH
RecR_HhH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AGG06847
LinkDB
All DBs
Position
complement(1179740..1182451)
Genome browser
AA seq
903 aa
AA seq
DB search
MSKPVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDCYAISF
DKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLA
TRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGLGPEHV
ADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLADNAEV
ARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLIHRLPGGENPGGGMT
DMFNTPQKVETRYIVANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAISPAEG
EAYFISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMNLLASAGQEIQGL
DFDTMLSAHLLGEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVAD
YTFRLKGLFAAQLAEINLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIF
KLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVD
LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM
GREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNIL
PSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRVAIYFAEI
KHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE
KLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGAVTFEIPLKVELKSGANWG
DME
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacctgtaattgtcctttttgacggcacaaatctggttcatcgggcatatcat
gtactgccacctcttacagtccgcaaaacaggtgaagtggtgggggccgcttttggtttt
gcatctatacttataaaagtcttaaccgacctgaaaccggattgttacgctatatccttt
gataaaaaaggccctaccttcaggcatgagatgttcaaggactacaaagcccagcgtccg
cccatgcctgacgagcttgtcagccagctgggacgggtacgccagattgtggatgctttc
aatatgcctgtgtacgagcagagcggttttgaggcagatgatgtgctgggtacactggct
accagagccgccgccgaaggcatggaggttataatagcctccggagacgcagactccatg
cagttggtcagtccggatattcgtattctgtatcccggcccggccggttctttttccaat
accagtctgtatgacgaggcggcagtaagggcaaagtacggtttagggccggagcatgtc
gcagattacaaagcccttatgggtgatccgtctgacaacatacccggagtacccggcata
ggcccgaaaactgcccagaaacttatagaagaatacggcggcatagaagatatatataaa
aatctggataaaataagcccgcccggtctccaaaagaaactggcagacaacgccgaagta
gcccgccagagtaaaatattaactacgattgtgtgtgatctgccgctggatttcagtatt
caggaatgtagatcggaacactataaccgccaaaaggtggtagacctttttcgtgaactg
gagtttttcaggctgattcaccgcctgccaggcggtgaaaatcctggcggcggtatgaca
gatatgtttaacaccccccaaaaggttgaaacccgctatattgtagccaacgggcagaat
ctagacagcatcgtgaagcggctcacggaaaccaaagagctggcactggcagtttcgggc
acttccgaagaagctatagatgcccgcctgactgcgctggcaatttcaccggcagagggc
gaagcctattttatttctgcagaatttatcggtagtgcttcggatgggcagatgtttgtt
tccgaaggtcacccgggtttgattgccctgcttacgaataaaaatataaccaagaccgct
cataatgccaagtacctcatgaatctgctggcttcagccgggcaggaaatacagggactg
gactttgataccatgctttctgcccacctgctgggtgaaaaaaatctgggtataaaagac
ttggtatttgaacacttcggggtggaaattgctgatgttgaaaacatacttactcagaac
ggcaagaaaaagagcttcagtgcatcagagctttcagaagccgcccagttggtggctgat
tacaccttccgcctcaagggtctgtttgccgcccagcttgccgaaatcaatctgatagat
ttgtttgtcaacgttgaaatgcctttggtacctatattactgggtatggagcgtagcggt
attatgctggataccgatttgctcaaaggtatggccgaaaaggtgggcgggcagatattt
aaactggaagaagccatatatgcccaagcgggacacagcttcaacataggttctccccag
cagttaggccggatactttttgacgaactgaaactgccggttatcaaaaaaaccaagacc
ggttattccaccggggcagaggtactggatgaactgaagggtgaacaccggattgtagac
ctgatacttgaatatcgtatgctggtcaaactgaaatctacctatctggatactctgccg
cgtatggtgaatccgcatacccgtcgcctgcataccagtttcaaccagaccagaacggct
accggcagattgtcttccagtgaaccgaatctgcaaaatatacccgtcaggggtgaaatg
ggcagagaaatacggcgggcatttattgccccgaagggtaccgtaatgctggctggagat
tactcccagatagacctgcgggtgctggcccatctttccggagaccctgccctgatagag
gcttttcttaaggaccaggatatccacactgctaccgctgccagattgctgaatatactc
ccgtctgaagtgacaaaggaacaacgccgtctggctaaaacggtgaatttcggagtgata
tatggcatgagcagctacgggttggaacaggctactgagctttcgctggcagaagccgac
aaatttatcaaggcatattttgaaaaatacccgcgggtagctatttactttgcggagatt
aagcatcaggctcggactaacgggtacgttgagaccctgctgggaagacgccggtatata
cctgaaatcaattcgcccaaccgtattttgcgtgaatcagccgaacgtatggccataaat
atgcctgttcagggtacgtctgcggatattatcaagctggctatggtcaggctggatgaa
aaactgaaagaagaaaagctggaaagccgcctgctacttcaggtgcatgacgagcttata
tttgaagtgcctgacgcagagcttaagcgtatgagtgctttgctgatggaaaccatgtca
ggtgcagtcacctttgaaataccgcttaaggttgagcttaagtccggagcaaactgggga
gatatggagtaa
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