Dehalococcoides mccartyi DCMB5: dcmb_1266
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Entry
dcmb_1266 CDS
T02476
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dmd
Dehalococcoides mccartyi DCMB5
Pathway
dmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dcmb_1266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmd03021
]
dcmb_1266
03019 Messenger RNA biogenesis [BR:
dmd03019
]
dcmb_1266
Transcription machinery [BR:
dmd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
dcmb_1266
Messenger RNA biogenesis [BR:
dmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
dcmb_1266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
nSTAND_NTPase5
OB_RNB
ATPase_2
Spore_III_AA
AAA
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGG06864
LinkDB
All DBs
Position
complement(1199837..1201111)
Genome browser
AA seq
424 aa
AA seq
DB search
MEIGQFELSELEKKTREELLDIAKEMGINGVTALKKQDLVMRLIQVYTESQGNVFCSGIL
EIMPDGYGFLRQASLLPSSSDIYVSQSQIRRFGLRTGDMVIGQGRPAKPGEKYYSLLRVE
AINDLNPEMAKRRPNFGALVPTFPDRLINLETTPTELATRLINLIAPIGRGQRGLIVSPP
KAGKTTILKNIANATATNYNDIHIMVVLIGERPEEVTDMRRHVRGEVMAATFDEPVENQT
RVAELALERAKRMVESGKDVFILLDGITRLTRAYNLAMPSSGRTLSGGIDPVALHPAKKF
FGAARNTEEGGSLTIIATCLVETGSRMDDLIYEEFKGTGNMELHLERRLAERRVFPALDI
PRSSTRREELLLGDNYKQVQLLRRMVAIIADDANHYTEVNERLLDRLRRSKNNAEFLANL
QKEM
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcggacaatttgaactgagtgaacttgaaaagaagactcgcgaagagcttctg
gatattgccaaagaaatgggtataaacggggtaactgcccttaaaaagcaggacttggtg
atgcgccttattcaggtttataccgaatcccaagggaatgtattttgttcgggtattctg
gaaataatgccggacggatacggattccttagacaggcatctctcctgcccagctcatca
gacatatatgtgtctcagtcccagatacgccgtttcggacttcgcaccggtgatatggta
ataggccaagggaggccggccaagccgggtgagaaatattacagtcttctgcgggtggaa
gctatcaatgaccttaaccccgaaatggccaaacgccgcccgaatttcggtgccttggtt
cccacctttcctgaccgcctgataaatctggaaaccacccccaccgaactggccacccgc
ctcataaacctgatagcccccataggcaggggacagcgcggtcttattgtttccccgccc
aaggccggcaagaccaccattttgaaaaacatagctaatgccaccgctaccaattataac
gatatacacataatggtagtccttataggcgaacgccctgaagaagtaaccgatatgcgc
cgccacgtgcggggcgaggtaatggccgccacctttgacgaaccggtagaaaaccagacc
cgggtagccgaactggcactggaacgggccaagcgcatggtagagagcggcaaagacgtc
tttatcctgctggacggcattacccgccttacccgtgcctacaacttggccatgccctca
tcaggccgcaccctttccggcggtattgacccggtagccctccaccccgccaagaaattc
ttcggggctgcccgcaataccgaagaaggcggctctcttaccatcatcgccacctgtctg
gtggaaaccggcagccgcatggatgaccttatttatgaagagttcaaaggcaccggcaat
atggaacttcatctggaacgccgtttggccgaacgccgtgtattcccggctttggatata
ccccgctcaagcacccgccgtgaagagcttctgctgggtgacaactacaagcaggtacag
ctcctgcggagaatggtagctattatcgctgatgacgccaaccactatacagaggttaac
gagcgcctgctggaccgcctgcgccgctccaagaacaatgctgaatttttggctaacctc
cagaaggaaatgtaa
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