Dehalococcoides mccartyi DCMB5: dcmb_394
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Entry
dcmb_394 CDS
T02476
Symbol
pdxS
Name
(GenBank) pyridoxal biosynthesis lyase PdxS
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Pathway
dmd00750
Vitamin B6 metabolism
dmd01100
Metabolic pathways
dmd01240
Biosynthesis of cofactors
Module
dmd_M00916
Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
dcmb_394 (pdxS)
Enzymes [BR:
dmd01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
dcmb_394 (pdxS)
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Gene cluster
GFIT
Motif
Pfam:
SOR_SNZ
ThiG
NMO
Dus
NanE
DUF561
IGPS
FMN_dh
His_biosynth
TetR_C_27
Ribosomal_S5_C
DHO_dh
TIM
Motif
Other DBs
NCBI-ProteinID:
AGG06024
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All DBs
Position
complement(403571..404452)
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AA seq
293 aa
AA seq
DB search
METGTFKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARM
ADPTIIEQIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADENFHVWKHDF
KVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDE
LSAYAKEINAPLELVLELHKTSKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS
SNPSAMAKAVVKAVTHYKDAQILAEISKGLGDAMPGLDIKQIDPDKLISQRGW
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccggtactttcaaagtaaaatctggcctggcccaaatgctgaagggcggggta
attatggatgtaactacccccgaacaggctaaaatagcagaagaagcaggtgcctgtgcc
gttatggcactggaacgcgtaccttcggatatcagagcggccggcggggtagcccgcatg
gcagaccccactattatagagcagattatgaaagtagtcagcatacccgttatggccaag
tgccgtatcggtcattttgtggaagcccaaatactggaatccatgggggtggactatatt
gacgagtccgaagtgcttaccccggctgacgaaaatttccacgtctggaaacatgacttt
aaagtccccttcgtctgcggctgccgtgatctgggcgaagccctaaggcggattggcgag
ggtgcggctatgatacgcaccaaaggcgaagccggtaccggcaacattgtggaagcggta
aggcatatgcgttccgttatgggctctgtcagaagggtacagtccatgtcacctgacgaa
ttgtccgcttatgccaaagagataaatgcacctctggaactggtgcttgaacttcataag
accagcaaactgccggtagtgaactttgccgccggcggagtagctaccccggccgatgcg
gccttgatgatgcaactgggggctgacggggtatttgtgggctcaggtatatttaaatca
tcaaacccctcggccatggccaaagcagtagtaaaggctgtgacccactataaagatgcc
caaatactggctgagatatccaagggtctgggtgatgccatgcccggtctggatattaaa
cagatagatcccgataaacttatttcccagcggggttggtaa
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