Dehalococcoides mccartyi DCMB5: dcmb_790
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Entry
dcmb_790 CDS
T02476
Name
(GenBank) putative RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmd03016
]
dcmb_790
Enzymes [BR:
dmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
dcmb_790
Transfer RNA biogenesis [BR:
dmd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
dcmb_790
Prokaryotic type
tRNA splicing ligases
dcmb_790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGG06403
LinkDB
All DBs
Position
762637..764097
Genome browser
AA seq
486 aa
AA seq
DB search
MTSPWHGILKKIDDYRWEIPQSYKVGMRVPGLVYASERMLNQIWEEHAIEQIANVAFLPG
IMGRSMAMPDIHWGYGFPIGGVAATRISDGVISPGGVGFDINCGTRLLRTNLSVEEVQPK
IDELLNELFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGEAEDIKLTEESGSL
SGANPDKVSNKAKTRGASQLGTLGSGNHFLEVQVVDEIFDPEVAAVFGVQALGQVLFLIH
TGSRGLGHQVCTDYVQLLNEAVKKYGINLPDRQLACAPLKSDDGQNYLAAMACAANYAWA
NRQCITHWARDAFMKVFEKGRLDLGMDQIYDVAHNIAKIEEHMVDGKVQNVCVHRKGATR
SFPAGRPEIPAVYRKVGQPVIIPGDMGRYSYVAVGTETAMRETFGSTCHGAGRILSRGAA
KKTTSGTQLLDTLRSQGISIRVGDIGSLAEEASEAYKDVADVVEVTHKAGIARNIFKTRP
LGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcccgtggcatggaatacttaaaaaaatagatgactaccgttgggaaatcccc
cagagctacaaagtaggtatgagagtgcccggtctggtatatgccagtgaacgtatgctc
aatcaaatatgggaggagcatgctatagagcaaattgccaatgtggcttttttgcccggt
attatgggcaggtctatggctatgcctgatattcattggggttacggtttccccatcggc
ggagtggccgctaccagaataagtgacggggtaatctcacccggcggcgtaggttttgat
ataaactgcggaacccgccttttaaggacaaacctcagtgttgaagaagttcaacccaag
atagatgagcttttgaatgagcttttttccaaaataccctccggggtgggtagcagcggt
aatataaagctaagcggaacagatatagataatgtaatgacccgtggcgggagctgggct
ttggaaaagggtatgggcgaagccgaagacattaaactgactgaagaatccggcagttta
tctggtgctaatcccgacaaggtttccaataaggccaagaccagaggtgcatcccaactg
ggtacactgggttcaggcaaccattttttggaagtacaggttgtagatgaaatatttgat
cctgaagtagcggcggtgttcggagttcaggcgctgggtcaggtactttttcttatccat
accggttcacggggtttggggcatcaagtatgtactgactatgtgcaactgttaaatgaa
gcagtcaaaaaatatggcataaatttgcctgaccgccagctggcttgtgccccgctaaaa
tcagacgatgggcagaactatctagccgctatggcctgtgccgccaattatgcttgggct
aaccgccagtgcatcacccactgggcacgtgatgccttcatgaaggtatttgaaaaaggc
cggcttgatttaggtatggaccagatatacgatgtagcccataatattgccaagatagaa
gagcatatggtagacggcaaagtgcagaatgtatgtgtccaccgtaaaggtgccacccgt
tctttccctgccggccgccctgagataccggctgtttaccgaaaagtcggacagcctgtt
ataatacccggagacatgggcagatactcgtatgtagctgtaggtaccgagactgccatg
cgtgaaactttcggttctacctgccatggcgcaggccggatactcagccgcggtgcggct
aagaaaactacttccggtacacaactgctggatactctcaggtctcagggtataagtata
agggtgggtgacataggcagtctggcagaagaagcctcagaagcctacaaagatgtggct
gatgtagtggaagtaacccacaaagcaggtattgcccggaatatatttaaaaccagacca
ttaggagtaatcaaaggttag
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