Drosophila melanogaster (fruit fly): Dmel_CG10110
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Entry
Dmel_CG10110 CDS
T00030
Symbol
Cpsf160
Name
(RefSeq) cleavage and polyadenylation specificity factor 160, isoform A
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Dmel_CG10110 (Cpsf160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dme03021
]
Dmel_CG10110 (Cpsf160)
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG10110 (Cpsf160)
Transcription machinery [BR:
dme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Dmel_CG10110 (Cpsf160)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Dmel_CG10110 (Cpsf160)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
44250
NCBI-ProteinID:
NP_995833
FlyBase:
FBgn0024698
UniProt:
Q9V726
LinkDB
All DBs
Position
2R
Genome browser
AA seq
1455 aa
AA seq
DB search
MFSMCKQTHSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEM
RLAPKMRLECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTL
SLHYFEEDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADV
KPIKKAPTAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPG
RIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYL
NQSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRTGDLYVLTL
CVDSMRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDE
VEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSGAKASVLQLR
KFIFEVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLKIELVAATGHSKNGAL
SVFVNCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLSQRNSTLVLQTGQEI
NEIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNVPIDVGSPVVQVSIA
DPYVCLRVLNGQVITLALRETRGTPRLAINKHTISSSPAVVAISAYKDLSGLFTVKGDDI
NLTGSSNSAFGHSFGGYMKAEPNMKVEDEEDLLYGDAGSAFKMNSMADLAKQSKQKNSDW
WRRLLVQAKPSYWLVVARQSGTLEIYSMPDMKLVYLVNDVGNGSMVLTDAMEFVPISLTT
QENSKAGIVQACMPQHANSPLPLELSVIGLGLNGERPLLLVRTRVELLIYQVFRYPKGHL
KIRFRKMDQLNLLDQQPTHIDLDENDEQEEIESYQMQPKYVQKLRPFANVGGLSGVMVCG
VNPCFVFLTFRGELRIHRLLGNGDVRSFAAFNNVNIPNGFLYFDTTYELKISVLPSYLSY
DSVWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGEDKELSEESRGERFI
YPIGSQFEMVLISPETWEIVPDASITFEPWEHVTAFKIVKLSYEGTRSGLKEYLCIGTNF
NYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLG
QKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISLLRFQEEYRTLSLAS
RDFNPLEVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESLGGQKLLRKADYHLGQV
VNTMFRVQCHQKGLHQRQPFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLS
YQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEE
ILGDLLEIERLASVF
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgatgtgcaagcagacgcactccgccacggcggtggagttttcgatagcatgc
cgcttctttaacaatctggatgagaacctggtggtggcgggcgccaatgtactaaaggtg
taccggatagcgcccaacgtggaggcgagccagcgtcaaaagctgaatcccagcgagatg
cgtctggcgcccaaaatgcgactggaatgcctagccacatatacgctctacggcaatgtg
atgtcgctgcagtgcgtctcattggcgggtgccatgcgggatgcgctgttgattagtttc
aaggacgcgaaattgtccgtactgcagcacgatcccgatacgtttgcgctgaaaactctc
tcacttcactatttcgaggaagatgacatacgtggtggttggacgggtcgctattttgtg
cccacagttcgcgtagatcccgattccaggtgtgccgtcatgttggtctacggcaaacgg
ctggtggtactgccctttcgcaaggacaacagcctggacgagatcgagctagcggatgtg
aagccaattaaaaaggctccgacggcaatggtcagcaggacgcctattatggcatcgtac
ctgatagcactgcgagatcttgatgagaagatcgacaatgttctggacatacaattcctg
cacggctactacgaaccaacgctgcttatactctacgaaccggtgcgaacctgtccggga
agaataaaggtgcgctccgatacttgcgttttggtggccatttcgttgaacattcaacag
cgagtgcatccgattatttggaccgtgaacagtctaccttttgactgcctacaagtttac
ccgattcagaagccaattgggggttgtctggtaatgacagtcaatgctgtaatctatctc
aatcagagtgtccctccatatggcgtcagtttaaacagttcagcggataacagcaccgca
tttccactgaagccacaggatggcgttcgtattagtttggattgtgctaactttgcattt
attgatgtcgacaagctggtaatctcgcttcgcactggagatctatacgtgcttacgctt
tgcgttgactcaatgagaacggttaggaacttccatttccacaaagcagccgccagtgtg
ctaactagttgtatctgcgttctgcactccgaatacatatttttgggatcacgtctcgga
aattccttattgctgcactttacagaggaggaccagagcacggtcattacgttagatgag
gtggaacagcaatcggagcagcagcaaaggaatctgcaggacgaggatcagaatttggag
gaaatttttgatgtagatcaattggaaatggcaccgacccaagcaaaatcgcgtcgtatt
gaggatgaggaactagaggtgtatggttctggagctaaggcatcggttcttcagctgcga
aaattcatatttgaggtgtgcgacagtctaatgaatgtagcaccaatcaactacatgtgc
gccggagaaagagtggaattcgaagaggatggcgttacgttgcgaccacatgcggaatct
ctgcaagatctaaagatagaactagtcgctgccacgggtcacagcaaaaacggagctctg
tccgtatttgtaaactgcattaatcctcaaatcataacaagctttgagttagatgggtgc
ctcgatgtgtggactgtgtttgatgatgccactaagaagtcttcgcgaaatgatcagcat
gatttcatgttgctttcacaaaggaattctacattggttttacaaacaggacaggaaatt
aatgaaatcgagaatacgggctttacggttaaccagccgaccatatttgtcggtaatctc
ggacagcagcggttcattgttcaggtcaccacccgtcatgtcagattattgcaaggaact
cgattaattcaaaatgtccccattgatgtgggctcgccagtggtacaggtgtccatagca
gatccctacgtttgcctgcgagtgctcaacggtcaggttatcacattagcgctgcgagaa
acccgtggaactcctcgtttggctatcaacaagcataccattagcagctcacccgcagtg
gttgccatttcggcatataaagatttatcaggactattcacagtgaaaggtgatgatata
aacctgaccggcagctcaaacagtgcatttggacatagttttggcggctacatgaaggcc
gagcccaacatgaaggtggaggacgaagaagatctgctctacggcgatgccggaagtgcc
ttcaagatgaacagcatggcggatttggcgaaacaatcaaaacaaaagaactcggactgg
tggcgacgccttcttgtgcaagcaaagcccagctattggttagtggttgcccgtcagagt
ggcaccttggagatctactcaatgccggacatgaagcttgtgtatctcgtaaacgatgtg
ggcaatggttcaatggttcttacggatgcaatggaattcgtgccgatttcactgaccacg
caggagaactcgaaggcgggcattgtacaggcttgtatgccgcagcatgctaactctcca
ctgccattggaattgagtgtaataggcttgggtctaaatggagaaagacctttacttttg
gtcaggactcgagtagagctgctaatataccaggtgttccgatatcccaagggtcacctg
aagatacgtttccgaaagatggatcaactgaatttgctggaccaacagccgacgcatatt
gacttggatgagaacgatgagcaggaggagatagaatcttatcaaatgcaaccaaagtat
gtccaaaaactacgaccattcgccaacgttggaggactctccggcgttatggtatgcggc
gtcaatccttgctttgttttcctaacattccgaggagaacttcgcatacatcggctgctt
ggtaacggagatgtgcgtagctttgctgccttcaacaatgttaatattcccaatggattc
ctttactttgacacaacctatgagcttaagatctctgtgttgcccagctacttgagttat
gactccgtttggccggtgagaaaggttcctctcagatgtacaccaagacaacttgtttac
catcgcgagaatcgggtttattgcctaatcactcaaacggaggaaccgatgaccaagtac
tatcggtttaacggcgaggataaggagctgtccgaggaaagccgtggcgagagattcatc
taccccattggctcgcaattcgaaatggttttaatatcaccagaaacctgggaaattgtg
ccagatgcatcaattacctttgagccctgggaacacgtcaccgcctttaagatcgttaag
ttgtcttacgaaggtacaagatcaggactcaaggaatacctttgcattggaactaacttt
aattacagtgaggatattaccagcagaggaaatattcatatatatgatattatagaagtg
gttcccgaacccggaaaaccgatgaccaaattcaagataaaggaaatatttaagaaggag
cagaagggaccagtttctgccatttcagatgttttgggttttctggtgacgggacttggc
cagaagatctacatttggcaacttcgtgatggagaccttattggagtggcttttatagat
acaaatatctatgtccatcagattatcaccgtgaaatccctgatttttattgcagatgtt
tacaaatccataagtttgctgcgcttccaggaggagtatcgcacattgtcgctggcctcg
cgagattttaatcctctggaggtttatggaattgaattcatggtggataactcaaatctg
ggtttcctggtgaccgatgccgagcgcaatataattgtctacatgtatcagccggaggcc
agggaatcactgggtggccaaaaacttctccgcaaggcggattatcacctgggtcaggtg
gtaaacaccatgtttcgggtgcagtgccatcaaaagggattgcatcagcgacaacccttc
ctctacgaaaacaagcatttcgtagtttatggcacgctggatggagctttgggatattgc
ttgccccttcccgagaaagtctacaggagattccttatgttgcagaatgtgctcctttcc
tatcaggaacacctttgcggcctcaatcccaaggaataccgcactctcaagtcatccaag
aaacaaggcatcaacccgtctcgctgcatcattgacggagatttaatttggtcatatcga
ctaatggccaattcggaacgcaatgaagtggcgaaaaagattggcacgcgcactgaagaa
atcttgggggatttgctggaaatcgaacgactagccagcgttttttag
DBGET
integrated database retrieval system
