Drosophila melanogaster (fruit fly): Dmel_CG10210
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Entry
Dmel_CG10210 CDS
T00030
Symbol
tst
Name
(RefSeq) twister, isoform B
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmel_CG10210 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG10210 (tst)
Enzymes [BR:
dme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dmel_CG10210 (tst)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Dmel_CG10210 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
Dmel_CG10210 (tst)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
42813
NCBI-ProteinID:
NP_001262884
FlyBase:
FBgn0039117
UniProt:
Q9VCH8
LinkDB
All DBs
Position
3R
Genome browser
AA seq
1197 aa
AA seq
DB search
MNEIRGEDNLERLRNYILRPELSLHNPLPDVLPRKFDPMRLLHAPRCPGSTKLAPRRDQS
GHILEFVELDLEAVGANANNSMSMQREPGLLEDATRGSHSNFPFWPGGFDEQRQQIAALD
VSNFQFGDKLLTVPPGFSSGYDFFQSQSVTLPPVVADPSNVDLLENLEQDLDVQEWMKLT
RSEETSSTGTPKSPKQSNVQLPSEEFRDVDDHIMKADLKPVLNISTTTKNFKSDWAEMVD
ISQPINNFKEQIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIAL
SKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLY
CGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVG
STKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGKYLQGNYEKAVERKKEM
QGKAKGGGGGPRNHLNAKQEQYTWIGLIDFLRRSNMMPVVAFTLSRNRCDSNLAALQSVD
LNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHHSGILPILKEIVEML
FQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGEYIQMAGRAGRRGHD
ETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAVILTCLRIESIKVEDIMKFSF
KEFNLKLQLPTQQKQLRLAEDKFAMLPTLGEHLQPLVNFYDKAVEYWKEKHRIMKFVVTQ
PKIQKELKAGRVIVITQGKHYNKLAILLNTKSVPGKDTIYKVLVLDHQFKAKDSNSLQQG
ELYYKILSLTPRNMTFQPVGIGGHTVLDIKAIDIISITKSTLKVDADAIIRNWEQRQLER
FKDSPPSGSVVKAVTELNQLNESYIDNPDNIKYVNLSKEIIVNADSEVAMLNYVDHLLRK
VGEFLPHTNIAGFEQEFAKVYERRMLEIHIEELRFKNSARNLTLYPDYCNKLKVLRALKY
IDELDEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKMQDKPVI
PEALKECVAAFEQINDTILAEEQRFQAAIETDNRLNFGLLEVVYEWARNKPFAEIMKLTT
VQEGIIVRCIQQLNETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagattaggggcgaggataacctcgaacggctgcgcaactatatcctgcgaccg
gagctgtccctccacaatcccctgccggatgttttgccccgcaaattcgatccgatgcgc
ctgttgcatgcgccccgttgcccgggaagcactaagttggctcctcgccgcgaccagagt
ggtcacatacttgagttcgtggaattggacttggaggccgtgggcgccaatgccaacaac
tcgatgtccatgcagcgggagccgggcttgctggaagacgcgacgcgtggctcccactcc
aattttcccttttggccaggcggtttcgatgagcagcgccagcagatcgcagctctggat
gtcagcaactttcagttcggggacaagctgctaacggtgccaccgggcttcagctctggc
tacgacttcttccaatcgcaatctgtaacactgccgcctgtggtcgccgatcccagtaac
gttgatctattggaaaacctagaacaggatctggacgtccaggagtggatgaagcttacg
cgtagtgaggaaacaagctccactggaacgcctaaaagtccaaaacagtcgaacgtgcaa
ttaccttcagaggagttcagagacgtggacgatcacattatgaaggctgacctaaagcct
gtgctaaacatttccaccacaaccaagaacttcaagagcgattgggccgaaatggtggac
ataagccaacccatcaataactttaaagagcagataccatgccccgccatggatttcccc
ttcgaactggatgtctttcaaaagcaggccattctcaagctggaacaacgccagtacgtt
ttcgttgcagcgcatacatctgctggcaagacagttgtagctgaatatgccatcgctctg
tccaagcgtgatctcacccgcaccatctacacatcgccgatcaaggcgttgtccaatcag
aagtaccgcgacttccgaaaaaccttcaaggatgtgggccttattacaggtgacctgcag
atagagcccaccgcctcttgtctgatcatgaccaccgagattctccgctcaatgctgtat
tgcggcagcgatgtcacgcgggatctggagtgggtgatcttcgacgaggtgcactatatt
aataacccagaaagaggacatgtctgggaggaggtcattatactcctgcccgaacatgtt
aacattataatgctcagtgccaccgtgcccaataccttggaattggccgactgggttggg
agcaccaagaagagaaaggtctatgtgatcagcactttaaaacgaccagtgcctctgacg
catttcctctatactggtgctggaggaaagagtcgcgatgacatcttcctcctggtggac
gcccagggaaaatatctgcagggtaactacgagaaggccgtggagcgcaagaaggagatg
caaggcaaggccaagggcggcggtggtgggccaagaaaccatttaaatgccaagcaggag
cagtacacctggatcggactaattgacttcctgaggcggagcaacatgatgccagtggtg
gctttcactctgtcccgcaatcggtgcgactccaatttggccgctttgcagtcagtggac
ctgaacacggaaaaggagaagggtgcagtgcagaagttcttcctgcagtgtctggcaaag
ctgaagccaccggaccgtacaattccgcaggttcttgttctcaaggacgctttggagaga
ggaataggtgtgcatcatagcggcatcttgcccattcttaaggagattgtcgagatgctc
tttcaaaatgggctagttaagctgcttttcgccaccgaaacgtttgccatgggcgtcaac
atgcccgcgcgcactgtggtcttcgactcctgcaaaaagtttgacggactggagatgcgt
aacctgaaaccaggcgaatacatccaaatggccggcagagctggacgccgtgggcacgac
gagacaggtacggcgatcattatgtgcaagggcagtgtgccaccatcgatggagctacgg
cccatgattctgggcctgccggagaagttgcagtcacagttcattctgcgctatgcggta
atcctcacatgtctgcgcatcgagagtatcaaggtggaggatatcatgaagttcagtttc
aaggagtttaacctaaagctccaattgcctacgcagcagaagcaacttcgtctggccgaa
gacaagtttgccatgctcccaactctcggcgaacatctgcaaccacttgtcaatttttat
gacaaagccgtggagtattggaaagaaaagcaccgcatcatgaaatttgttgttactcaa
cccaagatccaaaaggaactgaaagctggccgcgtcattgtgatcacgcagggcaagcac
tacaacaaactggccattctactcaacaccaaatctgtcccgggcaaggataccatctat
aaggtgctagtgctggaccatcaattcaaggcaaaggatagcaacagcctccagcaaggc
gagctctattacaaaatactttcgctgacgcctagaaacatgaccttccaaccagtggga
atcggaggacacactgtgctggacatcaaggctatagacattatcagtatcaccaagagc
acattgaaagtcgatgcagatgcgattatccggaattgggagcagcggcagctggagcgg
ttcaaggactccccgccaagtggatcggtggtcaaggcggtgaccgagctaaaccagctc
aatgagagttacattgacaacccggataacatcaaatacgttaatctttccaaggaaata
atcgtgaacgctgacagcgaggtggccatgctgaactacgttgatcacctgctccgtaag
gttggcgaatttctgccacataccaacattgccggattcgaacaggagttcgccaaagtg
tacgagcgccgaatgctggagattcacatcgaggagctgcgcttcaagaactccgcgaga
aatttgaccctctatccggactattgtaacaaattgaaggtgctgcgagccctgaaatac
atagatgaactggacgaggtcacacttaagggaaaagtggcctgtgagatgggccaaaat
gagctacttatcacggagctcatactatgcaacatgttcaacgatctcgagccggcagaa
atagccgccttgctctccggccttgtcttccaggcgaagatgcaggataagccggtaata
ccagaggcgttgaaggagtgcgtggcggcatttgagcagatcaacgatacaattcttgcc
gaggagcagcgctttcaggcagccatcgagaccgataatcgcctgaactttggtctgctg
gaggtggtctacgagtgggctagaaataagccctttgctgagattatgaaactgacgacg
gtgcaggagggcatcattgttcgctgcattcagcagctgaatgaaacgctgcgtgatgtt
aaaacggccgccattcggattggcaatccgggactgcagtcgaagatggaggaggcgtcg
gctgctatcaagcgcgatattgttttcaccgcatccttgtacacagaactgtga
DBGET
integrated database retrieval system
