Drosophila melanogaster (fruit fly): Dmel_CG10354
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Entry
Dmel_CG10354 CDS
T00030
Symbol
Rat1
Name
(RefSeq) Rat1 5'-3' exoribonuclease, isoform B
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03008
Ribosome biogenesis in eukaryotes
dme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Dmel_CG10354 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
Dmel_CG10354 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dme03021
]
Dmel_CG10354 (Rat1)
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG10354 (Rat1)
03009 Ribosome biogenesis [BR:
dme03009
]
Dmel_CG10354 (Rat1)
03016 Transfer RNA biogenesis [BR:
dme03016
]
Dmel_CG10354 (Rat1)
Transcription machinery [BR:
dme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Dmel_CG10354 (Rat1)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
Dmel_CG10354 (Rat1)
Ribosome biogenesis [BR:
dme03009
]
Eukaryotic type
Pre-60S particles
RNases
Dmel_CG10354 (Rat1)
Transfer RNA biogenesis [BR:
dme03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Dmel_CG10354 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
33964
NCBI-ProteinID:
NP_001260166
FlyBase:
FBgn0031868
UniProt:
Q9VM71
LinkDB
All DBs
Position
2L:6908083..6911423
Genome browser
AA seq
908 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII
HPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFV
HDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM
LGLATHEPNFTIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAE
VKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREG
AVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARD
KARKRQERNQDHGSLNQSAFGASAVGPNSQQRSVGNYKEEAAALRNRKRTSDMANLDDED
EEENNDEVRLWEDGFKDRYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWN
WYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDP
ESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGD
NYLYISNQSPHYKKVKKISEKDDESVCKAISFDGMRGTLGKTELNTAISGVLKSPISGLS
DINDNITVTTTFRDPEYDEDYIFEAKRLENAVDPPQVLPNEQSGNKHRPVIGFNSHLTRA
YVPDSGHRMLNAGIRNQQGGGGNGGGGGGYGQGGGYGQGIGGNQGQSYQNNSRNYNYNYN
NNYNQHQGGGYQNNYNNRQQQQYGHNQRFNQDNSNQQQRNFNNYNGPRNNNYQQQGGSRQ
QNQNYRRF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattctttcgctggctgagccggaagtatccatccgtgataatagaa
tgcaatgaaaacaagcaggtggacgcggacaccggtcgaaacatctacgaggaccccacc
ttgccgaatccaaatgggatagagtttgacaatctgtacctggacatgaacggcatcatc
catccgtgcacgcatccggaggacaagccggcgccgaagaacgaggacgagatgatggtg
gccatcttcgaatgcatcgaccgtctgttcggtattgtacgtcctcgaaaactgctctat
atggccatcgatggcgttgctccacgagccaagatgaatcagcagcgatctcgtcgcttc
cgagcggccaaggaaaccaccgaaaagcggctggagatagcacggatccgcgaggagctg
ctgagccgcggctgcaagctgccaccggagaaggagaagggtgaacactttgactccaac
tgcatcacgccgggcaccccgttcatggaccgactgagcaagtgtttgcactactttgtt
catgatcgtcaaaacaataacccggcctggaagggcatcaaggtgatcctgtcggacgcc
aatgtgcccggtgagggtgagcacaagatcatggattacattcgcaagcagcgtgcccag
cctgatcacgatcccaacacgcagcacgtcttgtgcggagccgacgccgatctcatcatg
ttgggtctggccacgcacgagcccaacttcacaatcattcgggaggagttcctgccgaat
aagccgcgtccctgcgacatctgcaacggatttggccacgagatggacaagtgtgtcgga
ctcggagcgactgcgccaactagcgccaattttaagcccgatgtgcccataggcgccgag
gtaaagttcatctttgtgcggctgagtgtgctacgcgagtacctaaagcagactcttgag
atgccgaatctgccatttgagtacagtttcgagcgcgcgttggacgactgggtgttcatg
tgcttctttgtgggcaatgattttctgccccacctgcctagcctggagattcgcgagggt
gcagtagatcgattggtggagttatacaagaagtgcgtttacaagacaaggggctatctc
accgactcgggagatgtaaatcttgaccgggtgcagctgattatgaccgacttgggcaat
gccgaggaccagatcttcaagagccgacagcgacgcgaggagcagttcaaggccagggac
aaggcgcgcaagaggcaggaaaggaatcaggaccacggatccttgaatcagtctgctttt
ggcgccagcgccgtgggtccaaacagccagcaaaggagcgtcggcaactacaaggaggag
gccgcggcacttcgtaatagaaaacggacgagtgacatggccaatttggatgacgaagat
gaggaggagaataacgacgaggtgcgattgtgggaggatggcttcaaggaccgctactac
gaatccaagtttgacgtggcaccgggtaaccagcagttccgatacgctgtagccctgcag
tatgtccgaggattgtgctgggttcttaagtactactatcagggctgtgcctcctggaac
tggtacttcccataccattatgcacccttcgcatcggattttgtcaacatccagggactg
tccacgatgttcgaaaagggcacaaagccgtttaatccgctcgagcaactgatgggcgtc
tttccggcagccagtagttcacacgtgcccgagccgtgggccaagctcatgtccgatccg
gagtcaccgatcattgacttctatccggaggactttaagatcgatctgaatggcaagaag
ttcgcctggcagggagtggctctgctgccgttcgtcgatgagaagcgtctcttcaaggct
ttggttccctactatgatcaacttactggagaggaggtgaagcgaaacaagcgtggagac
aattacctgtacatcagcaatcagagtccgcactacaaaaaggtgaagaaaatcagcgaa
aaggatgatgagagcgtttgcaaagccatctcatttgacggtatgcgcggcactttggga
aaaaccgaactaaacactgccatcagcggcgttcttaagtcgccgatttccgggctatcg
gacattaatgacaatataaccgtgacgaccacgttcagggatccggaatacgatgaagac
tacattttcgaagcgaagcgcctcgaaaacgccgtagatccgccacaggtgctgccaaat
gagcagtctggtaacaagcatcgtcccgtcatcggttttaatagccacttgaccagggcc
tacgttccggatagtggtcaccgcatgctgaacgctggcataaggaaccaacagggtggc
ggtggcaatggaggtggaggaggaggctacgggcaaggaggcggctacggccagggaata
ggcggaaaccaaggacagagctatcagaacaatagccgaaactataactacaactacaac
aataactacaatcagcaccagggtggcggctatcaaaacaactacaataaccgacagcag
cagcaatatggccacaatcagagattcaaccaggacaattcgaatcagcagcagcgcaac
tttaacaactataatggtccaaggaacaacaactaccagcaacaaggcggcagcaggcaa
cagaatcagaattatagacggttttag
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