KEGG   Drosophila melanogaster (fruit fly): Dmel_CG11184
Entry
Dmel_CG11184      CDS       T00030                                 
Symbol
Upf3
Name
(RefSeq) Upf3, isoform D
  KO
K14328  regulator of nonsense transcripts 3
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03013  Nucleocytoplasmic transport
dme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Dmel_CG11184 (Upf3)
   03015 mRNA surveillance pathway
    Dmel_CG11184 (Upf3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG11184 (Upf3)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     Dmel_CG11184 (Upf3)
   mRNA cycle factors
    P-body specific factors
     Dmel_CG11184 (Upf3)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 37792
NCBI-ProteinID: NP_611844
FlyBase: FBgn0034923
UniProt: Q9W1H3
LinkDB
Position
2R
AA seq 492 aa
MAETFAEEKPKEKSKASRRKDKKDKTNQIVKIVMRHLPPTMTEAQFLDQVGPLPENDSYY
YCKADWSLGQEATCRAYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCF
LKNKARNDDSKVNTIESEPHYQEFIKRLAQEREEASRMGDVKIDFNFERRTEEKVKSTPL
LQYLANKKEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEGGGGGGDTKKPAK
KDVKDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKDDGQGKQDKQDKQ
DKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEASKEKPATENTETPEA
AVKVFTPAARGGRKEKRTGADKQPAGSAHETAEEAIKAAQFRASEERRIRNKDRPSIAIY
QPKARIRASDELPQGAGGKDGSDGEASVVEEKTSKRNKRPNRRNKPKPKEVKECELETRR
FSKSSESSTSVK
NT seq 1479 nt   +upstreamnt  +downstreamnt
atggctgaaacttttgccgaggaaaagcccaaggagaagtccaaggcaagcaggcgcaag
gacaagaaggacaagaccaatcagatcgttaagattgtgatgcggcatttgccgccgacc
atgacggaggcgcagttcctggatcaggtgggtcctttgccggagaacgactcgtattac
tactgcaaggcagactggtcgctgggccaggaggccacctgtcgcgcctacatcgatatg
tcctccaaggacataggcgaggtggtgcagttccgggatcgcttcgacggctacgtcttc
gtcgaccacaagggcgtcgagtacatggccatcgtggagtatgctcccttccagtgcttc
cttaagaacaaggccaggaacgacgacagcaaggtgaacaccatcgagagcgaaccccac
taccaggagttcatcaagcggctggcccaagagcgcgaggaggcgagtcgcatgggcgac
gtcaagatcgacttcaacttcgaacggcgaacagaagagaaggtcaagtctacacccctc
ctgcagtacctggccaacaagaaggagaagcgccgggaggaggcgcgcaggcggaacgag
gagaagcggaagcaacgcgaggagcagaagctgttgcgattggcagcgcagtcggacgcc
agcaagcttaaggaggccgaaggaggcggcggaggaggagacacgaagaagccagccaaa
aaggatgtcaaagatccgcagtcatctggatcccaagccaatgatgccaaggcctcgcgc
tccaaacgacgaacggagcgggatcagaggcgacgcgaggaacacgaacagcgtaagcta
gtcaagcgggacaagaaaaaggatgacggccagggcaagcaggacaaacaggacaaacag
gacaaaggcaagccatccagcggcaagcagaacaaaaattcaaagtccatggacatcgtt
atcttgaagaaagcaaacaagccagaatcaaacgagagtttggacgtgccatccacttct
aacgctgcggaggcctcgaaagaaaagcctgcgactgaaaacaccgagacaccagaagct
gctgtcaaggtttttacaccggctgccagaggtggtcgcaaggaaaaaagaaccggcgca
gacaagcagccagcaggttccgcccacgaaactgcagaggaagccatcaaggctgctcaa
tttcgagcttcagaggagcggcgcattcggaataaagatcgaccatcgattgccatttac
cagcccaaagcccgaattcgtgcatcagatgagctgccccaaggtgcaggcggcaaagat
ggctcggatggagaggcttccgtggtggaggagaagacttcgaagaggaacaaacgcccc
aatcggcgcaacaaacccaaaccgaaggaggtgaaggagtgtgagctcgaaactcgtcgc
ttctccaaatcctccgagagcagcaccagcgtcaaatag

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