KEGG   Drosophila melanogaster (fruit fly): Dmel_CG31938
Entry
Dmel_CG31938      CDS       T00030                                 
Symbol
Rrp40
Name
(RefSeq) ribosomal RNA processing 40, isoform B
  KO
K03681  exosome complex component RRP40
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dmel_CG31938 (Rrp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG31938 (Rrp40)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Dmel_CG31938 (Rrp40)
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP40_N_mamm ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 319033
NCBI-ProteinID: NP_001285565
FlyBase: FBgn0260648
UniProt: Q8IPX7
LinkDB
Position
2L
AA seq 232 aa
MSATSTIVMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNY
QRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDLIYA
RVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRENCPVLAALTRELP
YEIAVGVNGRIWLKAHSLKETVALANAISALEQSGCAEIDKICGNLGDFLQA
NT seq 699 nt   +upstreamnt  +downstreamnt
atgagcgcgaccagcacaatagttatgcccggtgagcgaattgcggccattgaggagctg
gccaagagcaagcgggtgatactcggaccgggactgcggcgtctggatgacacggtggtg
gctagcaaggcgggcccacttcgacacaaggaacccggcaccttctgggtggacaactac
cagagaaggtacatcccggcacgcggggatctcattctgggcattgtgcgagccaaggcg
ggcgatctgtaccgcgtggacatcggagcaacggacacagcctccatatcgtatctcgcc
tttgaggcggccagcaagaagaatcgcccggatctgatccccggtgatctgatttacgcg
agagtcctgaatgcaagcgcggacattgaaccggagctggtctgcgtcaactcggtgggc
aaaagtggcaaactgggcgtcctcaccgatggattcttcttcaagtgcagcctgaatctg
ggaaggatgctgctgcgggaaaactgccctgttctcgccgctcttacccgggaactgccc
tacgagatcgctgtgggagtcaacggcaggatatggttgaaggcccattccctgaaagaa
accgtggccctcgccaatgccatttcagcgctggagcaatcgggatgtgcggaaatcgac
aaaatatgtggcaatctcggagacttcctgcaggcctag

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