Drosophila melanogaster (fruit fly): Dmel_CG3291
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Entry
Dmel_CG3291 CDS
T00030
Symbol
pcm
Name
(RefSeq) pacman, isoform B
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03008
Ribosome biogenesis in eukaryotes
dme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Dmel_CG3291 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
Dmel_CG3291 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG3291 (pcm)
03009 Ribosome biogenesis [BR:
dme03009
]
Dmel_CG3291 (pcm)
03016 Transfer RNA biogenesis [BR:
dme03016
]
Dmel_CG3291 (pcm)
03036 Chromosome and associated proteins [BR:
dme03036
]
Dmel_CG3291 (pcm)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Dmel_CG3291 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
Dmel_CG3291 (pcm)
Ribosome biogenesis [BR:
dme03009
]
Eukaryotic type
Pre-60S particles
RNases
Dmel_CG3291 (pcm)
Transfer RNA biogenesis [BR:
dme03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Dmel_CG3291 (pcm)
Chromosome and associated proteins [BR:
dme03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Dmel_CG3291 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
XRN1_DBM
Motif
Other DBs
NCBI-GeneID:
32935
NCBI-ProteinID:
NP_001162796
FlyBase:
FBgn0020261
UniProt:
E1JJR3
Structure
PDB
PDBj
LinkDB
All DBs
Position
X:complement(19485759..19492011)
Genome browser
AA seq
1613 aa
AA seq
DB search
MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQI
FQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE
LREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKI
MDYIRYMKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFGRNVKRTSVEE
TRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISS
NALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNK
SEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAVLLKEFQNYKRNFYR
NKFKRDPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEI
AFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDW
EAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQGPMPAYPPLRAL
PVLYCTEVAKWSHEIAVNLPYSVCIELPNAARTVFFPGFPTMQHLPFDFELRNDRVKVFE
QVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHLVKAIVVRVATRDQRVDSEGI
TLNDSRRFDSECKALQEHFINRMGIQFANYDVLVYVRTFAGNSTEFRDKGALMVRDSWSS
SVTGYPAQGVVADLTVWERMRKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTN
GRIQVSIMVRPEPKVNAARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPR
RQKMENVTKHNIGLQLKYPRQNEERAGYCFRTNNQWYYSSLAVDLMRNYCQRYPDVIDFF
GDSNDRAEFVFEQDVFPNAVGHRRVEELANWVRQQPHMKVERISCGSKTVCRETIELLIA
AVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVYRSKRPVRLFDRVVIVRTIYMVPVGTKG
TVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALVIIK
TDEEGKKQNDCELPVRDPQPNQAQDEPVRATSSRYVTAAGSTSVPITMKTQISDEFVKTR
SDPIARTDSYKPSSEPKPVPVPEQITNWRERVSTPTNKPQPAPNNWRINRSSSRQQGGSI
FVAPPTKTPDAAASTASTAFTAASSATLTPLDQTLALMSVLGVGEDQSSPPLQEAVQQQR
PPLLQQQRAPFPGQMPNLPKPPLFWQQEAQKQEALQQEAQQQEAQKKQQQAHAQMEPERI
NSQHFYRSGQTGAALNQPPLGAPSKRQWHEWVHPRMQHANAFHAGVNNGYQMRPKKNIAA
QSTFNNNVHMHLQQPYYPNQQQQQQQQQPLQLTEINNAPPRYSTIQDFVPIQAYRPKKLN
RVQPAGRQDVDATKNPSRSPVLQQPTNETIDTKASSSLPVQSAGEQVIGLMQTLEIKQPA
ASQSESDGVSTGSANAPTATTSSQAVNRRKHRVPRIGAKFDLEYILPDSPHPT
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcccaagttctttcgctacatcagcgagcgatatccgtgcctcagcgaattg
gcgcgggagcactgcatacccgagttcgacaatctgtacttggacatgaacggcattgtc
cacaactgctcgcatccggacgacaacaacatacactttcacctggaggaggagcagata
ttccaggaaatcttcaactacgtagacaagctgttctacctgatcaagccgcagcgcctc
ttcttcctttcagttgacggggtggctccacgggccaagatgaaccagcagcgcagccgg
cgattccggacggcgcgcgaggcggagcagcaggaggccaaggcggcccagcgaggcgag
ttgcgagagcacgagcgcttcgacagcaactgcattacgccgggcaccgaattcatggtg
cgtctgcaggagggactgcgcgcctttctcaaaacgaagatttcgacggatccgctgtgg
cagcgttgcaccgtaatcctaagtggccaggaggcgcccggcgagggcgagcacaagatc
atggactacattcggtacatgaagacgcagccggactatgatcccaatacacgacactgc
ctttacggcctggacgccgatctgatcattctgggcctctgcacccacgagctgcacttc
gtggtgctgcgcgaggaggtcaagttcgggcgcaacgtcaagcgcacctcggtggaggag
acgcgcttcttcctgctgcacctgggtctgctgcgcgagtacctcgagctggagttcgac
gccctgagaacagacgagcacaaattggacattgcgcagcttatcgacgactgggtgctg
atgggctttttggtcggcaacgacttcattccccacctgccgtgcctgcacatttcatca
aatgcactgccgctgctctaccgcacctacatcggcatttacccgaccctcggcggcaac
atcaacgagaacggcaagctcaacctgcgccgcttgcagattttcatatcggccctcacc
gaggtggagctggatcacttcaaggagcacgccgacgacttgaagtacatgaacaacaaa
tcagaggcgttcgacatggacgtcggcgagatcaccgagtctcaaaacctcgactccgat
ctcggagccctcatcaacaagagcatgctgctctacgatgacgacagcgaggaggactgc
tccgacgagaacgcggttcttctgaaggagttccagaactacaagcgaaacttctaccgc
aacaagttcaagcgtgatccgaatgatgaactgatcgaggaactgtgccaccactacgtc
aatgcgctgcagtgggtgctcgactactactaccgtggcgtgcagtcctgggactggtac
tatcccttccactacactccattcatcagcgacctcaagaacatcgagcaggtggagatc
gccttccacatgggcacgccctttctgccattccagcagcttctggcggtactgccggcg
gccagtgcaaagcttctccctgtcgcctaccacgacctcatgctgctgccgaccagcccg
ctggccgagttctatccactggagttcgagagcgacctcaatggcaagaaacacgattgg
gaggcggttgtgctgatacccttcatcgatgagggtcggctgctggccgctatgctgcca
tgcgaggctcagctgtcgctggaggagcgcgaacgcaaccgacacggtcccatgtatgtg
tacaaatacagtacggtggcgcagggtcccatgccagcgtatccaccgctgagggctctt
cccgtgctctactgcacggaggtggccaagtggtcgcacgaaatcgcagtcaatctgccg
tacagcgtgtgcatcgagctaccaaatgcggcgagaaccgttttcttcccgggatttccc
accatgcagcatctgcccttcgatttcgagctgcgcaacgaccgcgtcaaggtgttcgaa
caggtcagtcgcaaccagaacattgtgctaaaaccacgcaagcgccagctggaggacaca
ctgacggcggtggcctcccagtacctcgggaaggtgatccacgtcggctggccgcatctc
gtcaaggcgatagtggtgcgcgtggccacgcgagatcagcgcgtcgacagcgagggaatc
acgctaaacgattcgcggcgtttcgactcggaatgcaaggcactgcaggaacactttatc
aatcgtatgggaatacagtttgccaactatgatgtgctcgtctatgtgcgcacctttgcc
ggcaattcgacggagttccgcgacaagggggcattgatggtgcgcgactcgtggagcagc
tccgtcaccggctatccagcccagggcgtggtggccgatctgactgtgtgggaaagaatg
cgcaagaatttcctcaacgtggagcactacttccccgttggcagcacgatcttcttgatc
acggatccgtattacggcagcgagggaactgtgcaggacccacggctggcctacaccaac
ggccggattcaagtcagcatcatggtgcgaccggaaccgaaagtaaatgcggcacgtcag
ctgcaggaagagcgggaccgggactatctgagcaccttccaggtctgcaacttgctccga
atcagtggccgcaccctgggacgcctaagtggcaccgtgtgggtggtgctcggtccgcgg
cgtcagaagatggaaaacgtgaccaagcacaacattggcctgcagctcaagtatccgcgg
cagaacgaggagcgtgccggatactgcttccgcacgaacaaccagtggtactactccagc
ctggccgtggatctgatgcgcaactattgccagcgttacccagacgttatcgacttcttt
ggcgactccaacgatcgcgccgagttcgtattcgaacaggacgtgttccccaatgcggtt
ggccatcgccgcgtcgaggaactggccaactgggtgcgccagcagccgcacatgaaagtg
gagcgcatctcttgcggctccaagacggtctgccgcgagaccatcgaactgctgatagcc
gccgtcgacgacctgcgctcactgcccgtcaagcacgttaaactgcaggtgaagccgcac
ttgctcatcaagcccaatgtcacactgccagatgtctaccgatcaaagcgcccggtgcgt
ctcttcgatcgcgtcgtaatcgtacgcaccatttacatggtgcccgtgggcactaagggc
accgtgattggcattcatcccgttacggaccccaacccggtccgcctggagtgcgtccat
gctgtcgacacgttctgcaaggtgctgttcgacagccccgttccgaactgcaacaacatc
catggcatcgccgaagaccgagtttacaaggtgcccgaaattgccctggtgatcatcaag
acggatgaggaaggaaagaagcagaacgactgcgaactgccggtgagggatcctcagccg
aaccaggcacaggacgagccagtccgcgcgaccagcagtcgctatgtgaccgccgcaggg
tccacctcggtcccgatcacgatgaagacccaaattagcgacgaattcgtcaagacgcgt
agcgatccgatagcccgtacggattcgtacaagccatcgtcggagccaaaaccggtgccg
gtgccggagcagattaccaactggcgggaacgcgtcagtacgccaacaaacaaaccgcag
cctgcgccaaataattggcgcataaatcggtcttcatcacgtcaacagggcggtagtatt
tttgttgctccgcccacaaaaactcctgatgcagctgcaagcactgcttccactgcattc
accgcagcctcgtccgcaacgctgactcctctggatcagaccttggcgctcatgtcggtt
ttgggcgtgggtgaggaccagagctcgccgccactccaggaggcggtgcagcagcaacgt
ccgccactacttcaacagcaaagagctccgtttcccggacaaatgcccaatctacccaag
ccaccgctcttctggcagcaagaggcgcagaagcaggaggcgctgcagcaggaggcgcag
cagcaggaggcgcagaagaagcagcagcaggcgcatgcgcaaatggagcctgaacgtatc
aatagccagcatttctacagaagcggccagacaggagcggcgttgaatcagccgccattg
ggtgctccatcaaaaaggcagtggcatgagtgggtgcacccgcgcatgcagcacgccaac
gcattccacgctggcgtcaacaatggatatcagatgcgtcccaaaaagaatatagctgcg
cagagcacctttaacaacaacgtgcacatgcacctccagcaaccatattacccgaatcag
cagcagcagcagcagcagcagcagccactccagctgacggagatcaacaatgcgccaccg
cgatactcaacgatccaagattttgtgcccatacaggcgtaccgtcccaagaaattaaat
cgcgtccaaccagccggtcgtcaggacgtcgatgccaccaagaatcctagtcgttcgcct
gtgttgcagcaaccgacgaacgagactatagacacaaaggccagttctagtcttccggta
caatcagcaggcgaacaggtgattggactgatgcaaacgcttgaaattaagcagccggct
gcgtcgcagtccgaatctgatggggtctcaacaggcagtgcgaacgcgcccacagcaacg
acatcatcccaggcggtcaaccgaaggaagcatcgagtgcctcgcatcggagccaagttc
gacttggaatacatactgcccgactccccgcatccaacttaa
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