KEGG   Drosophila melanogaster (fruit fly): Dmel_CG3931
Entry
Dmel_CG3931       CDS       T00030                                 
Symbol
Rrp4
Name
(RefSeq) Rrp4, isoform B
  KO
K03679  exosome complex component RRP4
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dmel_CG3931 (Rrp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG3931 (Rrp4)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Dmel_CG3931 (Rrp4)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Dmel_CG3931 (Rrp4)
SSDB
Motif
Pfam: S1_RRP4 KH_6 ECR1_N ECR1_N_2
Other DBs
NCBI-GeneID: 37731
NCBI-ProteinID: NP_001286771
FlyBase: FBgn0034879
UniProt: Q9W1M9
LinkDB
Position
2R
AA seq 298 aa
MSTNAAIDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVA
GVIQKVNKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPG
GELRRRSAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPA
LVKRRKMHFHNLPCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRADREVIA
RLRNSILALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQARLRDADE
NT seq 897 nt   +upstreamnt  +downstreamnt
atgtccaccaacgcggcgatagatctggccctggaccgggtggactggcgcgacctggcc
gcgcagacggaggaacagccgagggtgtatacgccgggggaagtgctgatgccggaggcg
ggattcatgcgcggccacggaaccttcgtcgaggacgagaacatcaagtcctcggtggcc
ggggtgatccagaaggtcaacaagctgatctcggtgcgcccgcttaagagtcgctatgtg
ggcgagatcggggacgtggtggtggcccgcgtcagcgaggtgcaacagaagcgctggcga
gtggacaccaattcccggctcgactccatcctactgctctcctcggtgaatctgccaggc
ggagaactacgacggagatcggcggaggacgagcagatgatgcgacgatacttggacgag
ggcgatctcatctctgccgaggtccagaacatctttgaggagggctccctttcgctgtac
acgcgcagtttgaagtatggaaaactatcgcagggcatcctggtcaaggtgttccccgct
ctcgtcaagcgccgcaagatgcacttccacaacctgccctgcggcgcctccgtgatcctg
ggcaacaatggctacatctggatatcgccgaccaagggccaggaggaggaaggcggcgag
ggaggattcgctcagaacctgaacgagcatgtgccgcgcgcggatcgggaggtgatcgcc
cggctgaggaactccatcctcgcgctggccaagtgcaagctgatgatttacgacaccagc
atccagtacgcctacgaggagtccctgcgctacgaggcccacgagctgctccagcagaac
gccatctacgacatcggccagcagacgcaggctcgtctgagggacgcggacgagtag

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