KEGG   Drosophila melanogaster (fruit fly): Dmel_CG4152
Entry
Dmel_CG4152       CDS       T00030                                 
Symbol
Mtr4
Name
(RefSeq) Mtr4 helicase
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dmel_CG4152 (Mtr4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG4152 (Mtr4)
   03041 Spliceosome [BR:dme03041]
    Dmel_CG4152 (Mtr4)
   03009 Ribosome biogenesis [BR:dme03009]
    Dmel_CG4152 (Mtr4)
   03016 Transfer RNA biogenesis [BR:dme03016]
    Dmel_CG4152 (Mtr4)
Enzymes [BR:dme01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Dmel_CG4152 (Mtr4)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     Dmel_CG4152 (Mtr4)
Spliceosome [BR:dme03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    Dmel_CG4152 (Mtr4)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    Dmel_CG4152 (Mtr4)
Ribosome biogenesis [BR:dme03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    Dmel_CG4152 (Mtr4)
Transfer RNA biogenesis [BR:dme03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    Dmel_CG4152 (Mtr4)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C nSTAND3
Other DBs
NCBI-GeneID: 48782
NCBI-ProteinID: NP_524929
FlyBase: FBgn0001986
UniProt: Q9Y134
LinkDB
Position
2L
AA seq 1055 aa
MDIEELFDCFDEVTPSVPPPALNQEEKPSGSSASKKGNKRQADGTTASKEATSSKGAEGD
DKGDVTEEPTKRLKQEASTVAVDDDNNADDEPTRTLDIDDSATLEALRTRIVTHLLDAPK
SCTHEVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKT
VVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMT
TEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPN
ARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMA
VLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAM
QMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILK
ETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKKFRWISSGEYIQMAGRA
GRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYM
LERSFYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYHHIRSQLDQHGKQFRQWI
TKPQYLLPFLQPGRLVKVAAGSQEYDWGIVLNFKKQDQSRKNPLKAEPSVTIDVLLHVSE
AAAKTGDTEPCKPNERGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAK
KRFPLGPPVLNPIDDMNIKDREFRDIVNTISQFEKRLEEHPLHKSPELERIHRRYQDKVT
LQKQLQDLKAELKAARSLLQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELL
MTEMIFNGVFNDLTAPQAVALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKVST
ECKLDLDADTYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQM
CQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq 3168 nt   +upstreamnt  +downstreamnt
atggatatagaagagctgttcgactgttttgatgaagtgacgccgtcggtgccgccacca
gcacttaaccaggaggagaagccatcgggaagcagtgcctccaagaaaggaaataagcgc
caagcggatggcaccactgcatcgaaagaagctacatcctccaaaggagcggagggcgat
gacaaaggagacgtcactgaggagcccaccaagcgtctgaagcaggaggcgtcaacggtt
gcggtggatgacgataataatgcagatgacgaacccactcgtaccctcgacatagacgat
tccgcgactctggaggccctgcggaccaggattgtcacgcacttgttggacgctcccaag
tcatgcacccacgaggttgccgcccatcccgaccaggagtacatacccctaaagccgttc
agcggcgtgcctgcaaaggagtatcccttcgtcctcgatccgttccagcgccaggcgatt
ctgtgcattgacaacagccagagtgtgctggtttccgcccacacgtcagccggtaagacg
gtggtggcggagtatgccattgcaaaatcattggccgccaagcagcgggttatatacacc
actcccatcaaggctctgtccaaccagaagtttcgcgaattcaccgacgagtttaaggac
gtgggcttggtcaccggtgatgtgaccataaatccatcggcctcctgtttgatcatgacc
accgagattctgcgaaacatgttgtaccgcggtagcgagatcatgcgcgaggtgggctgg
gtggtcttcgatgagattcactacatgcgcgacaaggagcgcggcgtcgtctgggaagaa
acgctcatccttctgccggacaacgtgcgatatgtctttctttcggccaccattcccaat
gctcgacaattcgccgagtgggtctgccacctgcacaagcagccatgtcacgtggtctac
accgattatcgtcccactcctctgcagcactacatctttccggccggtggcgatggcatt
catcttatcgtcgatgaaaaggggcagttcaaggaggacaacttcaccacagcaatggca
gtgctggccaatgcaggtgaggccggcaagggagatcagaaaggacgccatgggggcatt
aagggaaccaatgccggacaaacgaatatctttaaaatagtcaagatgataatggagcgc
aattttgcaccggtcatcattttttcgttcagcaaaaaggactgcgagatctacgccatg
cagatggccaagttggacttcaacactcccgacgaaaagaaactagtggacgaagtgttc
aacaatgccatggacgtgctcaccgaggaggatcgtcgcctgccacaggtggaaaacgtg
ttgccgttgttgcgtcgcggcattggcatccatcacggcggtctgttgcccattctgaag
gagaccattgagattctgttcggcgaaggtctgatcaaggccttattcgccaccgaaacc
tttgcaatgggccttaatatgccggctcgaactgtgctgtttacggctccgcgtaagttc
gatggcaagaaattccgatggatcagctctggcgagtacatccagatggcgggacgtgcc
ggtcgacgtggattggatgacaagggcatcgtcattctcatgatcgatgaaaaagtttcg
ccggctgttggtcgtgacattgttcagggcaaggcagatcccatcaattcggccttccat
cttacatacaatatggtgctgaatctgcttcgtgtggaggaaatcaatccggaatacatg
ctggaacgcagtttctatcagttccaaaatcaagctgcactgcccggcctgcatgaccag
gtggagcagaagacgctggagctgaataagctgactatcaaggacgagcacaacattgcc
tcctaccatcacatacgctctcagctggatcaacacggcaagcagttccgtcaatggata
acgaagccgcaatacctattgcccttcctacagcctggtaggttggtcaaggtggccgcc
ggctcacaggagtacgattggggcattgtgctgaacttcaagaaacaagaccaaagccgc
aagaaccctttaaaggcggagcccagcgtcacgattgatgttttgctgcacgttagtgaa
gcggccgccaaaaccggcgacacggagccatgcaaaccgaacgaacgtggatgcatggag
gtggtgcccgtggcccacaccctcatcacccagatcagctcaatccgcgtgtacttcccc
aacgatctacgcagtgctgacaatcggcgagccgtgctcaagactatccaggaggccaag
aaacgattccccctgggaccaccggtcctcaatcccatcgatgacatgaacatcaaggat
cgagagttccgcgatattgtcaataccatttcccaatttgaaaagcgattggaggagcat
ccgctgcacaagtcaccggaattggagcgcatccaccggcggtaccaggacaaggtgacg
ctacaaaagcagctgcaagacctaaaggccgagctaaaggctgcccgcagtctgctgcaa
atggatgaactgaagcatcgcaagcgtgtgcttcggcgcatgggctactgcaagcctggc
gacgttatcgagttcaagggtcgtgttgcctgcgaactgagctcggcggatgagcttctc
atgaccgagatgatcttcaacggagtatttaacgacctcaccgctccgcaagccgtggct
ctactctcctgctttgtttgcgacgagaagtccagcgagtcggtgaaaagcgccacggag
ctatcgggcccactacgttcgatgcaggatctggcgcggcgcattgccaaggtgtccacg
gaatgcaaactcgatctggacgccgatacgtatgtggacaagtttaagcccttcctaatg
gacgtggtgctggcgtggtgcaagggctccagtttccttgccgtctgcaagatgaccgac
atcttcgaaggctccatcatccgctgcatgaggcgactggaggagcttctgcgccagatg
tgccaggcctcgaagaccattggcaacacggacctggagaacaagttctccgaaggaata
aggctgctcaagcgtgacattgtctttgccgcgtcgttgtatctgtaa

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