Drosophila melanogaster (fruit fly): Dmel_CG5208
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Entry
Dmel_CG5208 CDS
T00030
Symbol
Patr-1
Name
(RefSeq) protein associated with topo II related - 1, isoform B
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmel_CG5208 (Patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG5208 (Patr-1)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Dmel_CG5208 (Patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
Dmel_CG5208 (Patr-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
42058
NCBI-ProteinID:
NP_001287369
FlyBase:
FBgn0266053
UniProt:
Q9VEN9
LinkDB
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Position
3R
Genome browser
AA seq
968 aa
AA seq
DB search
MDDSFFGFDTNLPDEDGGDGRIVEAEYDALNDETFGSAINGDWEEAHETMVRLGGNGERV
RKRPAESSGNTDFADQGNGAFLRHANPLSSAPSSSGSTPAPLNAPFRQSRHIGDSDLELN
ISSMKLDDMDLSSFTTDSEAGGLSNRIKLDSGVWGSQPFPNNQHLFREPMRSAFKPQQQQ
HQQHQPQQMKPPQEANANFALNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQQAERKM
FDDFSLGNRQQVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPPRP
NLGFPGPELLPTPSSQQQLNGIGGNRVPPGFIYPQGLPGNIPQLPQHPLMQQHMPHNFPL
PGGNQRPLPNPQALPTALNNFAMHPSFNAMRAAGIHPGAFMQPPHPHQMLPPRMPPHPLQ
AATSLLGQQPPNSMYNMFNMRLVQEIQQNHPLLQQAAVVRQMQQSRAGSVASDRQRSQAQ
QQQQGRRPDGTGNYPLEEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRER
KAQQNGQMRNSQAHKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNST
SGNTNNGSGGNNNNLTGYIFSPLKFENSLGKLQYGSVTAPRKIIDADIMSGESNAAAEAN
ATSSSKSSTPLPTSASHDVNPSSMRKSRHILLLIETLYRYLLKLEDLESPEVMATIELKK
KKEAERIAALEQLEMANKTPEERAAEAANPQTMNPQLKNKFNYEVETKAALVNKLKAGLA
FDKVIAMMNVRKGKILIRRIMPFIADQSIRWVVWSGVFCSLQTVVKKDKDDVEGVLYALY
PEFKKHVNKATFELLVSISSAITLNDKKLAGIFCSRFGILSLVALILRAEEIYVSRTDAT
LSEENRQKWREFLAQVASCLNRTIQNQTISAAIESDAIQPLMDHFERFKDLKLDALLALI
TEARHQID
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcgtttttcggctttgacacgaatctaccggacgaagatggtggcgatgga
cgcatcgtcgaggcggaatacgatgccctcaatgacgaaacctttggatccgctataaat
ggcgactgggaggaagcccatgagacgatggtacgcctgggcgggaatggcgaaagggtg
cggaagcgacccgcggaatctagtggaaatacggattttgccgatcagggaaatggtgcc
ttcctgcgacacgctaatccgctatcatcggcgccctcttcaagcggctccactccggcc
cctttgaatgcccccttccgacagtctcgtcacataggggactcggacttggagctaaac
atttcctccatgaagttggacgacatggacctgtcctctttcaccactgatagcgaagcc
ggtgggctgagcaaccgcattaagctggactccggggtctggggatcacagccgtttccc
aacaaccaacatttgttccgcgagcctatgcgcagcgccttcaagccacagcagcagcaa
catcagcagcaccaaccacaacaaatgaagccaccgcaggaagcgaatgccaactttgca
ctgaatccacagccttttccaaaaattacaactctcgaggatatagagcgcaatatgatc
attcagcaggccattccgaaacaacagcagcagagccagcaacaggcggaacgcaaaatg
tttgatgattttagtctgggtaacaggcagcaggtgcctacaccaaccatgttgcagcaa
cagatgttgcagcagcagcatcatcagaaacaacagtcgcagcagcagccgccacaacaa
gcgcagcacaaggtaccccctggcttcttgggcacgccgcacacctctccaccgaggcca
aatttgggtttccccggacccgagctactgcccacgccatcgtcgcagcaacaactaaac
ggtattggtggcaaccgagtgccgcccggatttatttacccgcaaggtctgcccgggaat
attccgcaattgccccagcatcctctaatgcagcagcacatgccgcacaactttccactg
cccggcggcaaccagcgacctctacccaatccacaagctctgcccacggccctgaacaat
ttcgcgatgcatccaagcttcaatgcgatgcgcgccgctggaatccatccaggggctttt
atgcaacctccccatccgcaccagatgctgccaccgcgaatgccgccgcacccgctgcaa
gctgccacaagtctattaggtcagcagccaccgaattccatgtataacatgttcaacatg
cgactagtgcaagagatccagcaaaaccatccgctgcttcaacaggctgctgttgtacgc
caaatgcaacagagcagagcaggatccgtggccagcgatcgtcagagatcgcaggcgcaa
cagcagcaacaaggacgacgtccagatggtacaggaaattacccgctggaagagtacgat
gaatatgccaacctaatgagcacgcgcgacaagcactggctaatcggaatccagctttcg
cagctgaatacggacacgccgtatatcgacgactattactacacggtgttcagggagcgc
aaggcccaacagaacgggcaaatgcgcaacagtcaggcgcacaaggacaaccagttgaat
catccgcttactcagccacgcggccatgcgcagcttattctcgtacagttgggcaacaag
aatggtactcgcaatggacacggacgtgagcgacgcaactcggagaacaccaacagcacg
tcaggcaacacgaacaatggatcaggtggtaacaacaacaacctgacaggctatatattc
tcaccactgaagttcgagaactcactgggaaagctacagtacggaagtgtgacagctccg
cgaaaaattatcgatgctgacattatgagtggtgaatcaaatgccgctgctgaagccaac
gcaacttcttcatcaaaaagctcgactccgctgcccacctccgcgagccatgatgtaaat
cccagtagcatgcggaagtcgcgacacattttgcttctgattgaaacactgtatcgctat
ctgctgaagttggaggatttggaaagcccagaagtgatggccaccattgagctgaaaaag
aaaaaggaagccgaacggatcgcagcccttgagcagctggaaatggccaataaaacgccc
gaagaacgtgctgctgaagccgccaatccgcaaaccatgaatccgcaactaaagaacaag
ttcaactatgaggtagagacgaaagctgcgttggtcaataaattaaaggcaggtctggcc
ttcgacaaggttatcgccatgatgaatgtgcgcaagggaaagatacttattagacgcata
atgccctttattgcggatcaaagcattcgctgggtcgtgtggagcggcgtcttctgttcc
ctacaaacagtggtgaaaaaggacaaggacgacgttgaaggcgtcttgtacgctctttac
ccagagtttaaaaaacacgttaacaaagctactttcgaactcctagtgagcatttcatct
gctattacgctgaatgacaagaaacttgctggaattttttgcagtcgctttggaatcctt
tcgctggttgccctgatacttcgcgccgaggaaatctacgtctcgcgaactgacgcaact
cttagcgaggagaacaggcaaaagtggcgagaatttctggcacaggttgcatcctgcctc
aatcgcactattcaaaaccagaccatctcggcagccattgagtcggatgcaattcagcca
cttatggaccactttgaacggtttaaagatcttaaactggatgcactcttagcattaata
actgaagccaggcatcaaattgattag
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