Drosophila melanogaster (fruit fly): Dmel_CG6339
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Entry
Dmel_CG6339 CDS
T00030
Symbol
rad50
Name
(RefSeq) rad50, isoform D
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03440
Homologous recombination
dme03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dmel_CG6339 (rad50)
03450 Non-homologous end-joining
Dmel_CG6339 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dme03032
]
Dmel_CG6339 (rad50)
03400 DNA repair and recombination proteins [BR:
dme03400
]
Dmel_CG6339 (rad50)
DNA replication proteins [BR:
dme03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
Dmel_CG6339 (rad50)
DNA repair and recombination proteins [BR:
dme03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
Dmel_CG6339 (rad50)
BRCA1-C complex
Dmel_CG6339 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
Dmel_CG6339 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
Rad50_zn_hook
SbcC_Walker_B
AAA_21
AAA_15
AAA_29
AAA_16
Baculo_PEP_C
AAA_22
ABC_tran
AAA_5
YdjO
Motif
Other DBs
NCBI-GeneID:
37564
NCBI-ProteinID:
NP_726199
FlyBase:
FBgn0034728
UniProt:
Q9W252
LinkDB
All DBs
Position
2R
Genome browser
AA seq
1318 aa
AA seq
DB search
MSSIESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTGECPPG
SDRGKSFVHDPKIFGLNEVLAQIKMQVRDRRGAQVSICRTMKVSKKRNKMSFETMDSTIN
FLTGAGQSKREKQDSLSGRSVDIDVAISDFMGVSKAIINNVLFCHQEDSSWPLDESKKLK
EKFDAIFGITEYNKALDKIIKLRKEAMEELKIKEANIKHVAYLKQEMEVKTLNLQKAQRK
CDAIKAQCSECEEEMKPIEARLVEIRNVEFEIGKYQAQKVEMDTKHKNCKDQISTLTLKI
KKPFRGTLDELDQEISNFDQRMLEMRQKRTEVEGDLSQIKRSSVAEQEKLGTQDRKHCLA
KQRHQSELACRAQLLKRVKEFCRELHIPIDCDLVEQPEKMGEVLRDIEAMIITKHCEITE
IVEQNEKADRSRQVKIDELRIELTKSEQSVTAQEKQRESSKRESETLGVEIKKIETSMQD
LKKLEKEINEVNELYESATKNIDQQAIKDAIARKKASIAENQIQFKKLDEQLTFLGSMAK
LVAECSLKQKELDKKNQEVHRVRSRHSDHFGKLFKEPITCNYRRSMQVVYEKLRREIQEL
NEKANTQKLKEQSYEIKRKNLISDISRMEKELKDSEELIYQKCRSTPYDDLLERSKTTIS
KLQFDHGALKSSEALYKKYIQKMDEEPSCPLCHHNMTSDEACDLTSELTDEIQKLPDNIT
RAEKALKAEQIKYENLLQLKPTILKVKELKDSLPQKKEELKKVEELLGDSVSEYETLIAL
IGEPTHNMELANSMMGDMSLLDEALKDSARLTKDLDLQKGQLPASYDSSVSMDDLQAEKS
KVSKELETERKELESAQNAVQQQMDALNRLREKKNSLKDRQIHLREGLQSLPQLKERLEK
LNSFLTTVASEISELKAKIQPLKLNLRAAIEEKERLKKSESEKLAQLNSKYNSYKSTDHD
IQRLNKEAEDYAKLDLRNEIKKLDEIIMASKDKLRKLEAEISLKTDELETIKTECSNQQT
VERDLKDNRELKQLEDKEAKLRESCQVLDKQLGNLDFHSVSKEKVNLTKQRDKATVRKGE
LLGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANYEIEVTRLCIEDLGQYRLALEWALI
QFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDASADRRKTYNYRVVQSKNYS
EIEMRGRCSAGQRVLASLIIRLALAETFSSNCGVLALDEPTTNLDRANINSLCEALNCIV
EERQSQSNFMLIIITHDENFVSSLGKITSYHRVFRNEECKSVIRRVEAGPSKKALIDQ
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaattgaatcgctgtccatccagggaatacggagtttcggcacctatgccgac
gatcttcagagtataaagttttcctcgccggttaccctgattctgggcgagaacggatgc
ggaaagacgaccgtggtagagtgtctcaagtacgccttgaccggcgagtgtccgccgggc
agtgatcggggcaagagtttcgtccatgaccctaagatctttgggctaaacgaggtgcta
gcgcagatcaagatgcaggtgcgggacaggcggggtgcccaagtgtccatctgccgcacc
atgaaggtgtccaagaagcgcaacaaaatgtcctttgaaacaatggactccaccatcaac
ttcctgaccggcgctggacagtcgaagcgcgaaaagcaggactcgctaagcggccgctcc
gtggatatcgacgtggccatctcggacttcatgggtgtctccaaggctattatcaacaat
gtcctgttttgccatcaagaggactccagttggccgctggacgaatcaaaaaagttaaag
gaaaagttcgatgccatattcggcatcaccgagtacaataaggcgctggataaaatcata
aagcttcgcaaggaggctatggaagagctaaaaataaaggaggccaacataaagcatgtg
gcctacctcaagcaggaaatggaggttaaaactttgaacctacaaaaggcgcagaggaaa
tgcgacgcaattaaggcgcagtgcagtgagtgcgaggaggaaatgaagccgattgaggcc
aggctggtggaaatccgaaatgtagagttcgaaattgggaagtatcaagcgcagaaagtc
gaaatggacaccaagcacaaaaactgcaaggatcagatatccactctaaccctgaagatc
aagaaaccctttagaggtaccctggatgaattggatcaagagataagtaactttgatcag
cgcatgctagagatgcgtcagaaacgcaccgaagtggagggggatttgtcgcagattaag
aggtccagtgtcgctgagcaagaaaagttgggcacacaggaccggaagcattgcctggct
aaacaacggcatcagagcgagctggcttgtcgggcacagcttctgaagcgggttaaggag
ttctgccgggaactccatatacccatcgattgtgatcttgtggagcagcctgagaaaatg
ggagaagtccttcgggatatcgaggcgatgattataaccaagcactgcgaaatcacagag
atagtcgagcagaacgagaaggccgatcggagccggcaagtcaagatcgacgagcttcgc
attgagctgaccaagtcggagcaaagtgtaaccgcgcaggagaagcagcgggagtccagc
aagcgagagagtgaaactcttggagtggagataaagaaaatcgaaacatccatgcaagac
ctaaagaagcttgagaaagaaataaacgaggttaatgagttgtatgagagcgctacgaaa
aacattgaccaacaggctataaaagatgccattgccagaaagaaagccagcattgccgag
aatcagattcagtttaagaagctggacgaacaattgacattcctaggctccatggccaag
ctagttgccgagtgttccctgaagcaaaaggagctcgataaaaagaaccaagaggtacat
cgcgtgcgcagccgacactctgatcatttcgggaagttgttcaaggaaccaattacctgc
aattatcgccgatcgatgcaggtggtctacgaaaaacttcgtcgcgagatccaagaactt
aacgagaaggcaaacactcagaaactaaaagaacagtcatacgaaatcaagcgcaaaaac
ctcattagtgatatttcgcgaatggaaaaggagttaaaggacagcgaggagttaatatat
caaaagtgccggtcaactccgtatgatgatctgctggagcgaagtaagacgactatttcc
aaattgcaattcgaccatggcgcccttaaatcgtccgaggccctttataagaagtatata
cagaaaatggatgaggagccaagttgcccattatgccaccacaacatgactagtgatgag
gcgtgcgacttgactagcgagctaacggatgagatccaaaagttgcccgataatatcact
agagctgagaaagccttaaaggcggagcagataaaatatgagaacttattgcaacttaaa
cccaccattcttaaggtcaaggagcttaaggattcgttgccacaaaagaaggaggaactg
aaaaaggtggaggagctgctaggagacagcgtcagcgaatatgaaacattaattgctctt
attggggagccaactcataatatggagttggcgaattcaatgatgggtgatatgtcccta
ttagatgaggctttaaaagattcggcgcggctcacaaaagatctggatctgcaaaaggga
cagttacccgcttcctatgattcaagtgtgtctatggatgatctgcaggcggagaagagt
aaggtttcaaaagagttggagacggaacgtaaggagttggaatctgctcagaatgcagtc
cagcagcaaatggatgcccttaatcgtttgcgcgaaaagaagaatagtttaaaagacagg
caaatacatcttcgagagggtcttcaaagcttgccacagttaaaggaacgtttggagaag
ctcaatagtttccttacaacagtagcctctgaaatcagcgaattaaaggcgaaaatccag
cctcttaagctgaatttacgagcagccatagaagaaaaagagcgcttgaagaaaagcgaa
agtgaaaagttagcgcagctgaattccaagtacaattcctacaaaagcacagatcacgac
atacaaagattgaacaaagaagctgaggactacgccaaattggatcttcgaaatgaaatc
aaaaagcttgatgaaatcataatggcctccaaagataagttaaggaaattggaagccgaa
atatctttaaaaactgatgagctggaaacaattaaaacagagtgctccaatcagcagacc
gttgaacgggatttgaaggataaccgtgagctaaaacagctcgaagataaagaagccaag
ctaagagaaagttgccaggtgctggacaagcagctgggtaaccttgactttcatagcgtt
agcaaggagaaagtgaatctaactaagcaaagggataaggccacagtgcgtaagggcgaa
ctgctgggccagctgggcgagattcacagccaggtgaacaagttgcagcgtgaaatcgac
gagcccagatttaaggagtctttgaaaaacttccggaaggccaattacgagatagaggtg
acacgcctctgcattgaggacttgggccaatatcgtttagcgttggagtgggcccttatc
cagtttcactctgaaaaaatggagatgattaaccgtctgatccgcgagtactggcgtaag
atatatcgcggaaatgacattgactatattcaggtgaagactgatgaggtaagctcggat
gcttcggcggatcggcgaaagacatacaactacagagtggtccagtcgaagaactactca
gagatcgagatgcggggacgctgtagtgctggccagcgcgtccttgcctcccttattatc
cgcttggcactggccgagaccttcagcagtaattgtggtgtcctagctctggatgagccc
accacgaacttggatcgcgccaatataaactcgctatgtgaagccctgaattgcatcgtg
gaggagcgccaaagccagtccaactttatgctcatcatcatcactcacgacgagaatttc
gtttcgtctctgggcaagataacctcctaccatcgggtcttccgcaacgaggagtgcaag
tcggttatacggagagtggaggcgggtccatcaaagaaagctttgatagatcaataa
DBGET
integrated database retrieval system
