Drosophila melanogaster (fruit fly): Dmel_CG8954
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Entry
Dmel_CG8954 CDS
T00030
Symbol
Smg5
Name
(RefSeq) Smg5 nonsense mediated mRNA decay factor, isoform C
KO
K11125
protein SMG5
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Dmel_CG8954 (Smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dme03019
]
Dmel_CG8954 (Smg5)
03032 DNA replication proteins [BR:
dme03032
]
Dmel_CG8954 (Smg5)
Messenger RNA biogenesis [BR:
dme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
Dmel_CG8954 (Smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
Dmel_CG8954 (Smg5)
DNA replication proteins [BR:
dme03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
Dmel_CG8954 (Smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
34804
NCBI-ProteinID:
NP_001285914
FlyBase:
FBgn0019890
UniProt:
Q9V414
LinkDB
All DBs
Position
2L
Genome browser
AA seq
1177 aa
AA seq
DB search
MEVTFSSGGSSNASSECAIDGGTNRCRGLEPNNGTCILSQEVKDLYRSLYTASKQLDDAK
RNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGKKVREVMWRRGYYEFIAFVKKNW
HKQCQDAATAQENMQKLERFLCAGIFNYKRLSARMEEIYDLDLKYLIDFSIISDGYISDM
IGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGDLHRYFLDFRIDSKLSISKEQVA
KYYLEAFKLNPAIGMAQNQLGTLHYGQNHDLDSTYHYLYSLVCIIPFELSENNLNKLFAK
HTEYLERMDPEKLDFNIEDFFARFYLIVDIFFFDKEVPDFNALCHCVLIDLRKILCSQQL
RVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMDACIVSIEQTILARAQ
DNERFQAEYEERFQEFDTVVRKSRNEYKNWLAAVGECERKDKKLMPRPHSLKDCSSDSRD
SQHSGEEAKTQEAADGDKIGEAVSTRSSDEAKESDLKTPLSCKSKRRGMRLRRRRRKIAQ
SDDSSCYDSESELDTDFYSDEEDYTDLSSNFDTDFSDIDAADPGEPCGEERYAAANYSKK
ERKAGGGGGGGVGGVVYSDNEDVVIEEEKIVYPNEVERRSNSQEADSEELLRSFEVLQLN
FKSAEDAQSKPVAPPPVSFSEPPKKLVYRNKYTKINPNIVIDCLHNEPTIRALKMLFDWL
RINPEILIGCYHSNPEFVHKIMKLLNYCNIDIFTRKVYFERDLLTTANVRDSLVELFDVR
ANVPLTEDFAFKNFDIFQSTQITLDWETIIRERVTPQEESILRIFKMVDFGFFICKQKKF
NYRFCVKTRRFTETQKKKQREEKKGGGSRRRERRTAPKTNRTKRNEGRTRRYSDRKNGIV
RKSYTSNEEKDTVEECRKMPRKGYLRNRNAEKAAAVITSATGTSVAGGTSASTTTNSVIE
KLNLQSSSGADEERSEAKSKKCELMGKLWLQNEVETLEEELRDSPAHVVMSPFVVVDSKA
LTEYNGIVKSLVRTKKCIVLIPNAVLNELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQ
RDNESQPLSLLKISRKMDRDASVFLQIAQFCNHLVANHADPHVSELQKSVVTYLSGDNLH
EKNRQQQNFSYTGILDSIPVRYAQIQSFYAKFKANKK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacattcagctcgggcggatcatcgaacgcctccagcgagtgcgccatagac
ggcggcacgaatcgctgtcgcggcttggagcccaacaatggaacctgcatcctcagccag
gaggtaaaggatctttacagatccctctacaccgcctccaagcaactggacgatgccaag
aggaatgtgcagtcggtgggacagctgttccagcacgaaatcgaagagaaacgctcgctc
ctagtgcagctgtgcaagcagatcatcttcaaggactaccagtcggtgggcaagaaggtg
cgcgaggtgatgtggcgacgtggatactacgagttcattgccttcgtgaagaagaactgg
cacaagcagtgccaggatgcggccacggcccaagagaacatgcaaaagctggagcgattc
ctctgcgctggcatcttcaactacaaacgattgtcggcacgcatggaagagatctatgat
ctggatctaaagtatttgattgatttctccataatcagtgatggctacataagcgacatg
atcggagacaccatggagtcatcgcactcgggcacccacgcggtggacaagagtctggag
gccgtgtcctttgcactcgacaccatacactcatcgctgctcagtctgggcgatcttcat
cgctactttctagactttcgcatcgacagcaaactaagcataagcaaggagcaggtggcc
aagtattatctggaggccttcaagcttaatccggccattggcatggcccagaaccagttg
ggtacactgcactacggacagaatcatgacctggactccacttaccactacttgtactcc
cttgtgtgcatcataccattcgaactaagcgaaaataatcttaacaagctgttcgccaag
cacaccgaatacctagagcgtatggatccagaaaaactagacttcaacatcgaggacttc
tttgcccgtttctatctgattgtggacatatttttcttcgacaaggaagtgccggacttt
aacgctctgtgccactgtgtgctgattgatctacgcaagatcctgtgctcccagcagctg
cgcgttccggagccaagcatcttcaagattgtctccattctgttcttctgtctgtccaag
cttaagatgatcaactcaccaaaggtttactcgctgcacgcctttctggttgctgcctgt
tccgatctgatggacgcctgcatcgtcagcatcgagcagacaatcctggctcgcgcccaa
gacaacgagcgcttccaggcggagtacgaggaacgctttcaggagttcgatactgtggtg
cgcaagtcccggaatgagtacaagaactggctagctgcagtaggcgaatgtgagcgcaag
gacaagaagttgatgccacgcccgcactctctaaaggattgcagttcggattcgcgggac
agccagcactctggcgaggaggcaaagacccaggaggctgctgacggcgacaagatcggt
gaggccgtttccacgcgctccagtgacgaggccaaggagtccgaccttaagaccccgctc
tcctgcaagagcaagcgacggggaatgcgtctacgccgccgacgccgcaagatcgcccag
tcggacgacagctcctgctatgacagcgaaagcgaactggacacagacttttacagcgac
gaggaggattacacagatctaagttctaactttgacaccgatttcagcgacattgatgca
gctgatcctggggagccatgcggcgaagagcgctatgcagcagctaattacagcaaaaag
gagcgcaaagctggcggcggcggcggaggaggagtcggtggcgtggtgtactccgacaac
gaagacgttgttattgaggaggagaaaatcgtgtatcccaacgaagtagagcgcagatcc
aactcacaggaggcggactctgaggagttgctgcgcagctttgaggtactgcagctgaac
tttaagagcgcagaggatgctcaaagcaagccggtggcacctccgcccgtcagcttttca
gagccaccaaagaagctggtttatcgcaacaagtacaccaagatcaatcccaacatagtc
attgactgtctgcacaatgaaccgaccattagagccctgaaaatgctttttgactggctg
cgaatcaacccagagattctcatcggctgctaccactcgaatccggagtttgtgcacaag
atcatgaagcttctcaactactgcaacatcgacatcttcaccaggaaggtttacttcgag
cgcgaccttctgaccactgccaacgtgcgtgattctctggtcgagttattcgatgtgcgc
gccaacgttccgctcaccgaggactttgctttcaagaactttgacatcttccagagcacc
cagattacactggactgggagaccattatccgggagcgtgtcactccccaggaagagtcc
attctccgtattttcaaaatggtcgactttggctttttcatttgcaagcagaagaagttt
aactacagattctgcgtcaagacgcgtcgtttcaccgagacccaaaagaagaaacagcgc
gaggagaagaagggaggcggatcacgtcgccgcgagcgtcgtaccgctccgaagaccaac
cgaacaaagcggaacgaaggacgcacacgtcgctactccgatcgcaagaacggcatcgtc
cgcaagagctacaccagtaacgaggaaaaggacaccgtggaggagtgccgcaagatgcca
cgcaagggttacctaaggaatcgcaatgccgagaaggcggctgctgttataaccagtgcc
acgggaacctctgtcgccggcggaacctccgcctccacaaccacaaacagtgtcatcgag
aaactgaatttgcagtccagctcgggggccgacgaagagcgctcggaggccaagtcgaag
aagtgtgagctcatgggcaagctgtggctgcaaaacgaggtggagactttggaggaggag
ctgcgggacagtcccgctcatgtggtgatgtccccatttgtggtggtcgattcgaaggca
ttgaccgaatacaatggcatagtcaagtcgctggtgaggaccaagaagtgcattgtcctc
attccaaatgcagtgctcaatgagttggatgacttgaagaaacgcagcgagaatgtgcgc
catgtcatccgttggctggagcaggagtttaaacagggcaataggcacttgcgtgcccag
cgcgataacgaaagtcagccgctatccctgctgaagatatcacgcaagatggatcgtgac
gcctcagttttccttcaaattgcccagttctgcaatcacttggtggccaaccatgccgat
ccgcacgtcagcgaactgcagaagagcgtcgtcacgtacttgtccggcgataatttgcac
gagaagaaccgccagcaacagaacttcagctacaccggcatccttgactcgatacccgta
cgctatgcccaaatccagagcttctacgcaaaatttaaggccaacaaaaaatga
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integrated database retrieval system
