Dipodomys merriami (Merriam's kangaroo rat): 138803900
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Entry
138803900 CDS
T11079
Symbol
Trub1
Name
(RefSeq) pseudouridylate synthase TRUB1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmer03016
]
138803900 (Trub1)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
138803900 (Trub1)
Transfer RNA biogenesis [BR:
dmer03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
138803900 (Trub1)
Prokaryotic type
138803900 (Trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
138803900
NCBI-ProteinID:
XP_069844189
LinkDB
All DBs
Position
Unknown
AA seq
346 aa
AA seq
DB search
MADSQAAAVSSSTLKIDTVSISETAETASAMAVTSVAAAIAAAARTGSEARVSKAALAAK
LLSLSGVFAVRKPKGPTSAELLNRLKEKLLAEAEMPSPEWTKRKKQTLKIGHGGTLDSAA
QGVLVVGIGRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQEHIEG
ILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFT
LDVECGGGFYIRSLVSDIGRELSSCASVLELTRTKQGPFTLEEHALPEDKWTIDDIAQCL
EHCSSLLPAELALKKSKPEGSHEQVLSCEYITLNETKGEDDGIKTL
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggcagattctcaggcggcggcggtgtcttcatcgacgttgaaaatagacacagtctcc
atctctgaaactgccgagacagcctcggccatggctgttacctcagtagccgcggcgatc
gcggccgcggccaggaccggatccgaagccagggtctccaaggccgctctggccgctaag
ctgctgtcgctcagcggcgtgttcgcggtgcgcaagcccaaggggcccacctcggccgag
ctgctcaaccggctgaaggagaagctgctggcagaagctgaaatgccttccccagaatgg
accaagaggaaaaagcaaactttgaaaattgggcatggaggcactctagatagtgcagcc
caaggcgttctagtggttggcattggaaggggaacaaaaatgttgaccagtatgttgtca
gggtctaagaggtatattgccatcggagagctggggaaagctactgacacgttagattct
acaggaaaagtaacagaagagaaaccctacgataaaataacacaagaacatattgaaggc
attctacagaaatttactgggaatataatgcaggtaccccctctctattcagcactaaag
aaagatggacagagactttccactttaatgaagagaggtgaggtcgtagaagcaaaacct
gccaggccagttactgtgtacagtatctccctccaaaaattccagccaccatttttcaca
ttagatgttgaatgtggaggtggtttttatatcagaagcttggtcagtgacattggcaga
gaactctcttcctgtgccagtgtgctagagctgacccgaaccaaacagggaccatttacc
ctggaagagcacgctcttcccgaagacaagtggacgattgatgacattgcccaatgcctt
gagcattgttcatcccttctccctgcagagttggcacttaaaaaatcaaaacctgagggg
tctcatgagcaggttttgagctgtgaatatataaccctaaatgagacaaaaggagaggat
gatggaattaagacactttga
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