Dipodomys merriami (Merriam's kangaroo rat): 138804471
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Entry
138804471 CDS
T11079
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138804471
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138804471
Spliceosome [BR:
dmer03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138804471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
Ank_4
AAA_29
PBP-Tp47_a
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
138804471
NCBI-ProteinID:
XP_069844842
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRPSSVSPRPPAPGAGGPASGGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQRE
MEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAVMTCNLTHNT
KHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGE
SEFDAFRQSLPVFEKQEEIVNIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRI
FCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSC
PVIYIQGRPFEVKEMFLEDILKTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFK
PESQRQRAVPSVTEEYDVLDDGGDAVFSQLTEKDVNCLEPWLIKDMDSCLSDIWLHKDID
AFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWMA
LDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEK
VDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHS
NMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTML
KMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLL
APVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRAD
GVPNDSSDSEVEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPSK
PWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSSA
DTEFPDESTTAERVLTKSPSPALHPPQKYKDRGILHPKRSTEDRSDQCSVKSADSSTYPS
PCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRA
FWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQC
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKPTSD
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcccagcagcgtctccccgcggccgccggccccgggcgcgggcggcccggcc
tcggggggtcccgggggcggcggccgggccaagggactcaaggacattcgtatcgacgag
gaggtgaagatcgccgtgaacatcgccctggagcgcttccgatacggggaccagcgagaa
atggaatttccctcttctttgactagtactgaaagagcctttattcatcggttgagtcag
tctcttggtttggtctctaagagtaaaggaaagggagcaaatagatacctaactgtgaag
aagaaagacggatcagaaacagctcatgcagtgatgacctgtaatttgactcataacaca
aaacacgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgtactgaa
cttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaacagagaaatg
agcaagacaagcgggcgactcaacaatggcatacctcaagttccagtaaaaagaggagaa
tcagaatttgatgcattcaggcagtctttgccagtgtttgagaaacaagaagagattgtt
aacataattaaggaaaataaagtagtcttgattgtaggagaaactgggtcaggaaagacc
acacagattcctcagttcctcttagatgactgctttaaaaatggaatcccctgccgcata
ttttgtacacagccaagacgattagcagccattgctgtggctgaaagagttgctgccgag
agaagggaaagaattggtcaaacaattggttatcagatccgattagaaagcagggtttct
ccaaagacactgctgacattttgcacaaatggggtgctgcttcgcacattgatggccggg
gacagtaccttgtcaacagtgacccatgtgattgtggatgaagtgcatgaacgggatcga
tttagtgattttttacttacaaagttaagagatttgttgcaaaagcacccgactttgaaa
ctgattctttcaagtgctgccttggatgtaaatctctttataagatattttggaagttgt
ccagtgatatatatacaaggaagaccatttgaggtaaaagaaatgtttctggaagatatt
ctaaaaacgactggatataccaacaaagaaatgttaaagtacaaaaaagaaaaacagcga
gaagagaaacagcaaaccacactcacagaatggtactcggcacaggagaatacgttcaag
cctgagtctcagaggcagagagccgttcccagcgtgaccgaagagtacgacgtactggac
gatggtggtgatgcagtcttcagtcagttgacagaaaaagatgtgaactgtcttgaacca
tggttaataaaggacatggactcttgtctctctgacatatggctacataaagacatcgat
gcttttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattacagacat
agtgagaccagtgcaacagctctgatggttgctgctggacgaggcttcacaagtcaagta
gagcagttaatcagcatgggagccaatgttcatagtaaagcgtcaaatggctggatggct
ttagattgggctaaacactttggacagactgaaattgtggatcttctagaatcttacagt
gcttcattggagtttggcaatctagatgaaagttccctggtccaaacaaatggaaatgac
ctcagtgcagaagacagagagctcctgaaggcttaccatcacagttttgatgacgagaaa
gtagacttggatttgatcatgcatcttctatacaatatctgtcatagttgtgatgctggt
gcggtcctaatttttctgcctggatatgatgaaatagttggtctcagggatcgcatcctg
tttgatgacaagcggtttgctgacaatacacatagatatcaagtctttatgcttcattca
aatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgttcgaaaa
ataatcctttccaccaacattgctgaaaccagcatcactgtcaacgatgttgtcttcgtc
attgattcgggcaaagtgaaagagaaatcctttgatgcattgaactttgtaacaatgtta
aaaatggtgtggatttccaaagctagtgctattcagcggaaaggcagagcggggcgatgt
agacctggaatttgcttccgtctgtttagtagactacgatttcagaatatgttggaattt
cagactccagaacttttgagaatgccattacaggagctttgtttacacaccaagctgtta
gccccagtgaattgcaccattgctgatttcctgatgaaagcccccgagcctccgccagct
ttaattgtaagaaatgcagtacagatgcttaagacaatagatgccatggacgcctgggaa
gatctgacggaactcgggtatcatttggctgacttgccagtagagccccatcttggcaag
atggtcctgtgtgctgttgttctgaagtgtctggaccccatccttacaattgcctgcaca
ctagcgtaccgggaccctttcgttctgcccacgcaggcctctcaaaagcgagcggccatg
ctgtgccggaagcgcttcactgcgggcaccttcagtgaccacatggctcttctcagagca
ttccaggcatggcagaaagcacggagtgatggatgggagcgagccttctgtgaaaagaac
tttctttcacaagccaccatggaaataattataggaatgagaacacagctgctcggtcag
cttagagcatcaggttttgttagagcgcgaggtggtggtgacatccgagatgttaacaca
aactccgagaactgggctgtcgttaaggctgcattggtggcaggcatgtatcctaattta
gtccatgtggacagagagaatgtagtactgacagggccaaaggagaaaaaagtacgattt
catcccacctcagttctcagtcagcctcaatataaaaagattcctccagccaatggtcag
gctgcagcaatccaggcactgcccacagattggcttatttatgatgagatgactagagcc
catagaatagctaatattagatgttgttcagcagtgacacctgtcactgtattggtgttc
tgtggaccagctcgactagcaagcaatgctcttcaggaaccttcatcctttagagcagat
ggcgttcccaatgacagtagtgacagtgaagtggaggacagaactactgctaacttggct
gcgttgaaacttgatgagtggctcaattttaaactagagccagaggccgccagtttattg
ctgcagctcagacagaagtggcacagtctgtttttacgccgaatgagagctccatctaaa
ccctggtctcaagtggatgaagccaccatacgagcaattatagctgtgttaagtacggag
gagcaatctgcaggtttacagcaaccatctgggattggccagaggccaagacctatgtct
tcagaagaacttcctttggcatcctcttggaggtcaaataatagtaggaaaagttcagca
gacactgaatttcctgatgagtctactactgcagaaagagtactgacgaaatctccatct
ccagccttacaccctcctcagaagtacaaagacagaggaattttacatccaaagcggagc
actgaggaccgatcagaccagtgctctgtgaagtctgcggacagcagcacctacccaagt
ccttgtgcaagtccttccccaccatcttcaggaaagggctcaaaatctccttcaccaaga
ccaaacatgcctgttcggtacttcataatgaagagtagcaatctgagaaaccttgaaatt
tctcaacagaagggcatctggtctacaacccctagtaatgagcggaagctaaatcgggcc
ttttgggagagcagcatggtttacttggtattttctgttcaaggatctggacatttccag
gggttttcccggatgtcttctgagataggaagggagaagagccaagactggggctcagcg
ggcctgggcggggtctttaaggtggagtggatacgaaaagagagccttcccttccagtgt
gcacaccacctgctcaacccatggaatgacaacaagaaggtgcagataagccgggatggg
caggagctagaaccacaggttggtgaacagttgctccagttatgggaacgccttcctttg
ggagaaaaacccacaagtgactga
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integrated database retrieval system
