Dipodomys merriami (Merriam's kangaroo rat): 138804797
Help
Entry
138804797 CDS
T11079
Symbol
Trim56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmer04121
]
138804797 (Trim56)
Enzymes [BR:
dmer01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138804797 (Trim56)
Ubiquitin system [BR:
dmer04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
138804797 (Trim56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
ANCHR-like_BBOX
zf-RING_2
zf-C3HC4_4
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
138804797
NCBI-ProteinID:
XP_069845348
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MVSQGSSPSLLEALSSDFLACKICLEQLRMPKTLPCLHTYCQDCLAQLAEGGRVRCPECR
ETVPVPGAGVAAFKTNFFVNGLLDLVKARTCGDLRADRPSCALCPLVGGASAGGPATARC
LDCADDLCQACADGHRRTRQTHAHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEPLRFL
CQPCGQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEQLLAGVDANLAGLEATREAEKAA
LARVKEQAARVGSQVDEAAEAILRALLAQKHEVLGQLRAHVEAVEEAARERLAKLEGQEQ
VARAAATFARRVLSLGREAEILSLEGAIAQRLQQLQDGPWSPGPASCPLPRLTLHPGIRD
KNCHLLSLSFEKQEGQDGDEEQAGAQGEDGTQSQGEEDGASQERQDGGQTPPEDRAQTPQ
EDEPAHTPRGDRAQTPQEGGRARIERGSGQPTKKKRSRGRHKLASREPSPALGPQLEGSG
LLPRPVFVCSFPTRMPGDPCAPRITGLCAFGPQEILVADEQNGRLKRFSLKGDYRGQVPV
PEGQFPCSVAALRDAVAFSTNARLYLISHDGKVRWRRAVSHTQSSHAVAALPSRDRVAVT
VGSHVEVYNEEGSLATRFIPGGKAQRGQRALVFLATSPQGHFVVSDWQQKSVVVCDGLGR
VAGECQGPGLQGCQPGSVAVDKDGFIFLTLRGVNQVVILDPKGSYLSEFMSAYHGLEKPR
VISVVDGRYLVVSLSNGTIRVFRIRSADS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccagggctcctcaccctccttgctggaggccctgagcagcgacttcctggcc
tgtaagatctgcctggagcagctgcgcatgcccaagacgctgccctgcctgcacacctac
tgccaggactgcctggcccagctggccgagggcggccgcgtgcgctgcccggagtgccgg
gagaccgtccccgtgccgggcgctggcgtggccgcctttaagaccaacttcttcgtcaat
ggactcctggacctggtgaaggcgcggacgtgcggggacctgcgggccgaccggccgtcc
tgtgccctctgcccgctggtagggggcgcgagcgcggggggcccagccaccgcccgctgc
ctggactgcgccgatgacctgtgccaggcctgcgccgatggccaccgccgcacccgccag
acacacgcgcaccgcgtggtggacctggtgggctaccgggccggctggtacgacgaggag
gcccgggagcgccaggccgcccagtgcccccagcaccccggcgagccgctgcgcttcctg
tgccagccctgcggccagctgctgtgccgcgagtgccgcctggacccgcacctggaccac
ccgtgcctgcccctggccgaggccgtgcgcgcccgcaggcccggcctcgagcagctgctg
gcgggcgtggatgccaacctcgccggcctggaggccaccagggaggcagagaaggccgcc
ctggcccgggtgaaggagcaggcggccagggtgggcagccaggtggacgaagccgccgag
gccatcctccgggctctgctggcccagaagcacgaggtgctggggcaactccgggctcac
gtggaggctgtggaggaggctgctcgggagaggctggccaaactggaaggccaagaacag
gtggccagggcggcggccacatttgcccggcgggtgctcagcctggggcgagaggcggag
atcctatctctggaaggggcgattgcccagaggctccaacaactccaagatggcccctgg
tcccccgggccagcctcctgcccgctgccccggctgacactgcacccggggatccgggat
aagaactgtcacctgctcagcctttctttcgagaagcaagagggccaggatggcgacgaa
gagcaagccggtgctcagggagaggatggaactcagagccagggagaagaggatggagcc
agccaggagagacaagatggaggccagacacccccagaagacagagcccagacaccccaa
gaagatgagccagcccacactcccagaggggacagagctcagacaccccaagaaggtgga
cgagcccgaatagaaagaggcagcggccagcccaccaagaagaaaagaagccgaggccga
cacaagttagcctcccgggagcccagccccgccctgggcccccagctggaaggttctggc
ctgcttccccggcctgtcttcgtctgcagcttccccacgcgaatgccgggggacccgtgc
gccccccgcatcacggggctctgtgccttcggtcctcaggagatcctggtggccgatgag
cagaacggacgtctaaagcgcttctccctcaagggcgactaccgaggccaggtgcccgtg
cctgagggccagttcccctgcagcgtggccgccctgcgggacgccgtggccttctccacc
aacgcccggctgtacctcatcagccacgatggcaaagtgcggtggcgccgggctgtgagc
cacacgcagtccagccacgcagtggccgcgctgcccagcagggaccgggtggctgtcacc
gtgggcagccacgtggaggtctacaatgaagaaggcagcctagccacgcggtttatccct
ggcggcaaggcccagcgtggccagcgggccctggtattcctagccaccagcccacagggt
cattttgtggtgtccgactggcagcagaagagcgtggttgtatgcgatgggctgggccgc
gtggctggggagtgccagggccctggcctgcagggctgccagccgggctccgtggccgtg
gacaaggacggcttcatcttcctgacccttcgcggagttaaccaagtggtgatcctggac
ccaaaggggtcctatcttagcgagttcatgtcggcctaccacggcctagaaaagcccagg
gtcatcagtgtggtagatggcaggtacctggtggtgtcactcagtaatggaaccatccgg
gtttttcgtatccggtcagctgatagttaa
DBGET
integrated database retrieval system
