Dipodomys merriami (Merriam's kangaroo rat): 138807200
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Entry
138807200 CDS
T11079
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmer03036
]
138807200
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
138807200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
138807200
NCBI-ProteinID:
XP_069848874
LinkDB
All DBs
Position
Unknown
AA seq
2903 aa
AA seq
DB search
MTDPIMDFFDDANLFGETLEGLSDDTFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQSTP
THQKMTDFEQLNQFDSMKFHQVNQSFGSPAEHMLSPHSQFNCSPIHPPNQPNGLFPDVAD
GSPMWGHQTAPSISNQNGSPFHQQGHSHSMHQNKSFVAHPDFALFQANEQQTQCTSLRSQ
QNRNNLNPGQNSLSQSKNFIDVNVSGPHRVNVNHPSHITNASASQPSHSIHFSQTSNPSV
HFLKCNSHQDGNFNGSSPNMTSCSVSNSQQFSSHYSFPSNHVSPNSLLQSSAVLAPNHAN
QTLSDFTGSNSFSPHRRIKQESTQHILNPSASLNSNNFQMLHSSHPQGNYSSSKLSPVHM
NFQDPVDSGAQMSHFSDHVETNGFSTLEENLLHQMGSHTEPFTGLDPEELLQEGLLPQFD
ETTFGQDNSNHVLDHDLDRHFTSHLIARPSDMAHTQLQYQARSWHSSFPNHQHLHDRNRL
CLQRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKQRKKVESESKQEKANRIISEAIARAKE
RGERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKDSRKTKTCSKLKEKTKIGKLII
SLGKKQKRKTESSDEISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYAEDTEGKQSEEEVK
GAMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRIVKKEISPGVTIDTEEYFVK
YKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVL
EVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQAARPDTRHLER
PPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL
HEILLTGLKGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQ
GRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE
HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFLQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGVGQTNVPNLVNTMME
LRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGH
KVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQDKAVKVYRLVTRNSYEREMFDR
ASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDI
DQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDTLSG
RNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSSGYGRTECFRVE
KNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITP
TEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKADWLRKYNPEQLLQDEGYKKH
IKHHCNKVLLRVRMLYYLKQEVIGSECQKVFDGVDASDIDVWVPEPDHSEVPADWWDFDA
DKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYMDGDVEDPEYKP
APAIFKDDIEDDVSSPGDLVIADGDGQVMEGDKIYWPTQSALTTRLRRLITAYQRTNKNR
QIQQIQPTFSVPASVTQPICEETTLSPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDP
NRGRFDWTKFRAMARLHKKTDDSLEKYLYSFVSMCRRVCRLPSKDELVDPNIFIQPITEE
RASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGLHDRDLLIGAAKHGV
SRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASSLTSLPRLLDAKG
ILEDIKVKNENVKEEPPSSEEESMSSVDTRTIIKSEPVSPKNGILSQAAEDQKSGGKGET
DRRMVSARTEPLTPNPASKKQRIHKRGSESSSDSDSESERSSCSSRSSSSSSSSSSCSHS
RSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDEES
VASLSTTQDETQDSFQANNGTPESAYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGK
WPSARRSYDANTVASFYTTKLLDSPGAATEYSEPSVPTPPGAGVKEEQDQSTQMSKVKKH
VREKEFTVKIKDEGGLKLTFQKQGLAQKRPFDSEDGALGQQQYLTRLRELQSASETSLIN
FPKSMPLSGTSIQSTSGANGIILDNQPLVKKRRGRRKNVEGVDIMFFNKNKPPNHVTLSL
TTSQISPGLNPALSYTQPQRIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGY
VEDLGAFIPKMQLHEGRPKQKRHRCRNPNKLDINSLTGEERVQLINRRNARKVGGAFAPP
LKDLCRFLKENSEYGVAPEWGDVVRQSGFLPESMYERILTGPVVREEVSRRGRRPKSGIA
KATAAAAAAAAAVSATNVTGNPLLTNGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMP
AGLSSGGDSKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSAESGAEEKKGNVSKELELKKE
RTESQNPENGGENSVSSSPSTSSTTALNTAAATNPLALNPLLLSNILYPGMLLTPGLNLH
IPTLSQSNNFDVQKNKNSDLGLSKSVEEKEEDSRVKDQEGKGGPEPSPLNENSTDEGSEK
ADASSGSDSTSSSSEDSDSSNED
NT seq
8712 nt
NT seq
+upstream
nt +downstream
nt
atgacagatccaatcatggacttctttgatgatgccaatctttttggtgagactttagaa
ggattgtcagatgatacatttgtacaaccaggacctgtctcactagttgatgaattgaac
ttgggtgcagaatttgaacctttgcacatagactcattgaaccatgttcaaagtactcca
acacatcagaagatgactgattttgaacagttaaatcagtttgactcaatgaaatttcac
caagttaatcaatcttttggaagcccagctgaacatatgttatctccacattctcaattt
aattgttctcctatccaccccccaaaccaacccaatggtttgtttccagatgtagcagat
ggcagtccaatgtggggccatcagacagctcctagcatttctaatcaaaatggatctcct
tttcaccaacaaggacattcacactctatgcatcaaaataaaagctttgtggcacaccct
gactttgccttatttcaggccaatgaacaacaaacacagtgtacttcattacgctcacaa
cagaacagaaataatcttaatccagggcaaaactctcttagccaatctaaaaattttata
gatgttaatgtttctggtccacatagagtcaatgttaatcacccatctcatattactaat
gcatctgcttcacaaccatctcattcaattcatttttctcaaacatcaaacccttcagta
cacttccttaagtgtaacagtcatcaagacggaaattttaatggatcatctccaaatatg
acttcttgttctgtcagcaattcacagcagttttcttcacattattcctttcccagtaat
catgtatcacccaacagtctccttcaatcctctgcagttcttgcacctaatcatgcaaat
cagactttatctgattttactggaagtaattccttttcgcctcataggagaatcaagcaa
gaatccactcagcatatcctaaaccccagtgcatcactgaattcaaataatttccaaatg
ttgcattcatcacatcctcagggtaattatagcagttcaaaattatctcctgtgcacatg
aacttccaagatcctgttgactcaggagctcaaatgagccatttcagtgatcatgtagaa
accaatggtttttcaactttagaagagaatttacttcatcaaatgggatctcatactgag
ccatttacaggacttgacccagaggaacttcttcaggagggtcttcttccccaatttgat
gagacaacatttggacaagataattcaaatcatgttttggatcatgaccttgatcgacac
tttacttcccatcttatagcacgaccttctgatatggctcatactcagttgcaatatcag
gctcggagttggcattcatcatttcctaatcatcagcatttacatgacagaaatcgcctg
tgtttacagcgacagcctccatcttccaagaagagtgatggttctgggacatatactaag
ttgcagaatacccaggtgagggtcatgtctgagaagaagcagagaaaaaaagtggaatca
gaaagcaagcaagaaaaggctaatcgtattatatcagaggccatagcaagagcaaaggaa
cgtggggagcgcaatattccacgggtaatgagtcctgaaaactttcctagtgcttcagtt
gaaggaaaagaggaaaagaaaggtagaaggatgaaatctaaaccaaaggacaaagacagc
agaaaaacaaaaacttgttctaagttaaaagagaagacaaaaattggcaaactcattatt
tcattgggtaagaaacaaaaaagaaagactgagtcttcagatgaaatatctgatgcagag
cagatgccacaacacacattgaaagatcaagactctcaaaaaagaaggtctaatcgacaa
attaaaagaaaaaagtatgcagaagatacagaaggaaaacaatctgaagaagaggttaaa
ggtgctatgaaaataaaaaagaattcagctcctttacctggtgaacagcctttacaatta
tttgtggaaaatccaagtgaagaagatgctgcaattgtagataaaatactatcttctaga
attgtaaaaaaggaaatatcacctggagtgacgattgatacagaagaatattttgtgaaa
tataaaaactactcctatcttcactgtgaatgggccacagaacagcaactgttgaaagat
aaaaggattcagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacatttt
tttgcagatatggaagaagaaccatttaatccagactacgttgaagtagacagagtatta
gaagtctctttttgtgaagataaagatactggtgagcctgtcatttactatttggtcaag
tggtgctcattgccatatgaagatagtacatgggaattaaaagaagatgtagatcttgca
aaaatagaagagtttgaacaattgcaagctgcaaggcctgacacaagacatttggaacgt
cctccctctaatatttggaagaaaatagatcaatccagggactataaaaatgggaatcaa
ctcagggaatatcaactagaaggtcttaactggctcttgttcaactggtacaataggcga
aactgcattttagcagatgaaatgggtcttgggaaaaccattcaatcaattacattcctc
catgaaatccttctgactggcttaaaaggacctttcctgattattgcacctctttctacc
attgcaaactgggagagagaatttcgtacgtggactgatattaatgttgtggtttatcac
gggagcctgataagcagacagatgatacagcaatatgagatgtacttcagggattcacag
gggcgtatcatacgaggagcttacagattccaagctatcatcaccacatttgaaatgatt
cttgggggctgtggtgagcttaatgccattgaatggcgatgtgtgataattgatgaagca
cacaggttaaaaaataaaaattgtaaactactggaaggcttgaaactcatgaatctggaa
cacaaggtccttttgactggcactcctctccaaaatacagttgaagaactattcagtctt
cttcattttcttgaacctttaaggtttccttctgaatcaacatttttgcaagaatttgga
gatcttaaaacagaggaacaggtgcagaaacttcaggccattctgaaaccaatgatgttg
aggcgattaaaggaagatgtagaaaagaaattagcacctaaggaagaaaccatcattgaa
gttgagcttactaacatacaaaagaaatactacagggctattttggagaagaacttttca
tttttatccaaaggagtaggacaaactaatgtacctaacttggtcaataccatgatggag
ctcaggaaatgctgtaatcatccatatcttattaaaggtgccgaggaaaaaatacttggt
gaatttagagatacatataatccagctgcttctgattttcaccttcaagcaatgatccaa
tctgctggtaaattggttttaattgacaaattgcttcccaaaatgaaagcaggaggtcat
aaagtactcatcttctctcagatggttcgctgccttgatatcctggaagactatctcata
cataaaagatatttatatgagcgaattgatggaagagtcagagggaatctccgacaagct
gcaatagatcgatttagtaaacctgattcagatcgatttgtttttctcctttgtacccga
gctggtgggctgggcatcaacttaactgcagctgatacatgtataatttttgattctgat
tggaatcctcaaaatgaccttcaggcccaagctcgttgccacagaattggtcaggacaaa
gcagttaaagtctacagattagtaactcgtaactcctatgagagagagatgtttgaccgg
gccagtctgaaacttggccttgataaagctgtgctacagagcatgagtggaagagaaagt
aatgttggtggtattcagcagctttctaaaaaggaaatagaagatttgcttagaagaggt
gcttatggtgccattatggaggaggaagacgaaggctccaaattctgtgaagaggacatt
gatcagattttattacgccgtacaaaaactattactattgagtcagaaggtcgtgggtca
acatttgccaaggcaagttttgtggcatctggaaacaggacagatatttccttggatgat
cccaatttctggcaaaaatgggctaagaaagcagaaattgatatagataccctcagtggc
agaaatagcttggttattgacactccaagaattaggaagcaaacaagaccctttagtgcc
acaaaagatgaattggctgaattatctgaagctgaaagtgaaggagatgaaaaacctaaa
cttcggagaccctgtgatcgctccagtggctatggaagaactgaatgctttagagtagag
aaaaacctgctagtttatggatggggccgatggagagagattctttctcatggacgtttt
aaaaggcagctaaatgagcatgatgtagaaataatttgccgagctcttttagcatattgt
ctcgttcattaccgaggagatgaaaaaattaaaggtttcatctgggatctcattacacca
actgaagatggacagacacgtgagctacaaaatcatctaggcctgtcagctcctgtgccc
aggggtcggaaagggaagaaagtaaaaactcaaacaagctcatttgacatacaaaaagca
gactggcttcgaaaatacaatcctgagcaactacttcaagatgaaggctacaaaaaacat
ataaaacaccactgtaataaggttttgcttcgtgtgaggatgctatattatctgaagcaa
gaagttattggaagtgagtgtcagaaagtatttgatggagttgatgcaagtgacattgat
gtttgggtaccagaaccagatcattcagaagttcctgctgattggtgggactttgatgct
gacaagtcactccttatcggagtatttaaacacggttatgaaaaatataacactattcga
gcagacccagcattatgcttcttggaaagagtgggaaaacctgatgacaaagcagtggct
gcagaacagagagcaaatgattatatggatggagatgttgaagatccagaatataaacct
gctcctgccatctttaaagatgatatagaggatgatgtttcctcacctggagatctcgtt
atagcagatggagatggtcaagtgatggaaggggataaaatttattggcctactcagtca
gcattaaccacaagactgagacgtctcatcactgcctatcagcgaactaataaaaacaga
caaatccagcagatacaaccaaccttctcagtgcctgccagcgtgactcagcctatttgt
gaagaaactactcttagtcctaaaatggcagccaagatagagaggcagcagagatggaca
agaagagaagaagctgatttttatagagttgtatctacatttggagtagtttttgaccct
aacagaggccgatttgattggacaaaatttcgagcgatggcccgactacacaagaaaact
gatgatagtttggaaaaatatttgtactcatttgtttcgatgtgtcggcgggtttgtcgt
cttccttccaaagatgaattggtggatccaaatatttttatccaaccaatcacagaagaa
cgtgcttcgaggactttgtatcgcattgaacttctaagaaaagtacgggaacaagccctt
cgacatccacagttgtttgaacgcttgaagctctgccatccaaatccagatttaccagtc
tggtgggaatgtggccttcatgatagggatttgcttattggtgctgctaaacatggggtg
agccgaacagactatcacattcttcgtgatcctgaactctcctttatggcagctcaaagg
aactacagtcaaagtaagatggcgcattcaagaacttctaccccacttttacagcaatat
caagtagcactttctgcttcttctcttacctctctgcctaggctcctagatgctaaaggt
attctagaggatataaaagtgaaaaatgaaaacgttaaagaagagcctccttcttctgaa
gaagaatctatgtcttctgtggataccaggacaataataaagtctgagcctgtaagtcca
aagaatggaattttgtcacaggctgctgaagaccagaaatctggtggaaaaggtgaaaca
gacagacgcatggtttcagccagaacagaacctctaactccaaacccagcttctaagaaa
cagagaatccacaaaagagggtcagagtctagttctgattctgactctgagtctgagaga
tcatcctgttcttccagatcatcatcttcttcgtcttcctcctcttcttgttcccattct
cgatcaggctctagttcttcttcatcctcatcttgttcttcagcatcttcatcttcctcc
tcctcatcatcatcgtcatcatcttcttcttcttcatcagaagaaagtgacagtgaagaa
gaggaagtccaaaagcgagcagaaggtactcctcacatgaaagcttatgatgaagaaagt
gttgcatcactgagcactacacaggatgagacccaggatagtttccaagctaacaacggg
actccagagtctgcttacctcttacaaggtggatacatgctggcagcctcatattggcca
aaggatcgggtaatgatcaacaggttggacagtatttgtcaaacagttcttaaagggaag
tggccttcagctagaagaagttatgatgctaacacagtggcttctttctataccacaaaa
ctgctggacagccctggagcagctacagaatatagtgagcccagtgttcccactccccca
ggtgctggtgtcaaagaagaacaagaccagtcaacacaaatgtcaaaggtgaagaagcat
gtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaagttgacattt
cagaagcaggggcttgctcagaaaagaccatttgatagtgaagatggtgctctggggcaa
caacagtacctcacccgactgcgggagcttcaaagtgcatcagagacaagcctgatcaat
tttccaaaatctatgcctctgtcaggtacctccattcagtcaacatctggtgccaatgga
ataatactagataaccagcctctggtcaagaaaagacgaggaaggaggaagaatgtagaa
ggtgtcgacatcatgttttttaacaagaacaaaccacctaatcatgttactttaagctta
accacctcacagatttccccaggactaaatccagccctatcctatactcaacctcaaaga
attccagatacagaaagtccagttcctgttattaatcttaaagatggaacaagacttgca
ggagatgatgcaccgaagagaaaggatttggaaaaatggcttaaagagcacccaggttat
gtggaagatttaggagcttttattcctaaaatgcaactacatgagggaaggcctaaacaa
aaaaggcatcgttgtagaaatcccaataaacttgatattaatagcctcactggagaagaa
cgtgttcagctgattaacagaagaaatgccagaaaggttggaggtgcttttgctccccct
ttgaaagatttatgtagattcttaaaagaaaattcagaatatggagtagctcctgaatgg
ggagatgtggttagacaatctgggtttcttccagaaagtatgtatgaacgcattctcacc
ggtcctgttgtaagagaggaagtgagccggcgagggagacgacctaaaagtggaattgca
aaggccaccgcagcagcagcagcagcagcagcagctgtatctgccaccaatgttacaggc
aatcctttgttaaccaatggattactcccaggtgtggatctaacaactcttcaggcctta
caacaaaacctgcaaaacttgcagtcactgcaagttactgctgggcttatgggaatgcct
gctggcctttcttcaggaggagatagtaaaaacatggctgctatgttccccatgctgctg
tcaggaatggctggattaccaaatctgttgggcatgggaggactcctgacaaaatctgca
gaatctggggcagaagaaaaaaagggaaatgtttccaaggagctagaattaaaaaaagaa
aggacagagagccaaaatccagagaatggtggagaaaactctgtgtcaagttctccttca
acgtcatctactactgcattaaatacagctgcagctaccaaccctttagctcttaaccca
ctattactatctaatatactttacccagggatgcttctcactccaggccttaatcttcat
attccaaccttgtcccagtctaataattttgatgtacagaaaaacaaaaacagtgactta
ggcttgtctaagtctgtagaagaaaaagaagaagattccagagttaaagatcaggaaggc
aaggggggacctgaacctagtcctctcaatgaaaacagcacagatgagggttcagagaaa
gcagatgcttcatcagggtcggatagtacatcatcgtcctcggaggattccgattctagt
aatgaagactga
DBGET
integrated database retrieval system
