Dipodomys merriami (Merriam's kangaroo rat): 138807414
Help
Entry
138807414 CDS
T11079
Symbol
Abca5
Name
(RefSeq) cholesterol transporter ABCA5
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
138807414 (Abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dmer02000
]
138807414 (Abca5)
Transporters [BR:
dmer02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
138807414 (Abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
DUF4162
Rad17
Motif
Other DBs
NCBI-GeneID:
138807414
NCBI-ProteinID:
XP_069849266
LinkDB
All DBs
Position
Unknown
AA seq
1642 aa
AA seq
DB search
MATAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYGE
VPDTELNPMDKSILSNLILGYTPVTNITSDIMQRVSTDHLQDVIITEEYENEKEMVASSH
FKSSNFVGVVFKDSMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI
DAAIIQLKTNVSIWKELESTKAIIMGETAVIEIDTFPRGVILIYLVIAFSPFGYFLAIHI
VAEKEKKLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMSVIATASSLFPQSSSFVIF
LLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGLLIVLMESFPKSLVWLLS
PFCQCTFLIGIAQVMHLEDFNEGALFSNLTEGPYPLIITMIMLALNSIFYVLLAVYLDQV
IPGEFGLRRSSLYFLKPSYWSKSKRNYKELSEGNVNGNISFSEIVEPVSSEFVGKEAIRI
SGIQKTYRRKSENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI
YGYRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNIIQEVQKVLL
DLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLKYR
KASRVTVLSTHFMDEADILADRKAVISQGMLKCVGSSIFLKSKWGIGYRLSMYIDRYCAT
ESLSSLVRQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDIHSNLGVISYGVSMTT
LEDVFLKLEVEAEIDQADYSVFTQQPPEEEMDSKSFDEVEQSLLILSETKASLVNTMSLW
KQQVSTIAKFHFLNLKRESKSVRSVLLLLLIFFAVQIFMFLVHHSFKNAVVPIKLVPDLY
LLKPGEKHHKYKTSLLLQNSTDSDISDVINFFTYQDIMVTMFNDSDYVSAAPHSAALNVV
GSEKDYVFTAVFNSTMVYSLPVLMNIISNYYLYHLNVTETIQVWNTPFFQEITDIVFKIE
LYFQAALLGIIVTAMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWIGQAIVDIPLFFVV
LILMLGSLFAFHHGLYFYAVKFLAVVFCLIGYVPSVILFTYIASFTFKKILNTKEFWSFI
YSVTALTCIVITEITFFMGYTVTAVFHYTFCIAIPIYPLLGCLISFIKVSWKTIPKHEKT
FNPWDRLLVAVIMPYLQCILWIFLLQYYEKKHGGRSIRQDPFFRTFSRKSKNKKFPDPPN
NEDEDEDVRAERLKVKELMSCQCCEEKPAIMVSNLHKEYDDKKDFLHSRKVKKVATRYIS
FCVKKGEILGLLGPNGAGKSTIINILVGDVEPTSGQVFLGDYTPDTTEDDNYIKCMGYCP
QINPLWPDITLQEHFEVYGAVKGMSASDMKEVISRITNALDIKEHLQKTIKKLPSGIKRK
LCFALSMLGNPSVTLLDEPSTGMDPKAKQHMWRAIRTAFKNKKRAAILTTHYMEEAEAVC
DRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENIEIDRLQREIQYIFPNASRQ
ESFSSILAYKIPKEDVQSLSQCFSKLEEAKHTFAIEEYSFSQATLEQVFVELTKEQEEED
NSCGTLNSTLWWERTQEDRVVF
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaattagggaggttggagtttggagacagaccagaacacttctactgaag
aactatctaattaaatgtaggactaaaaaaagtagtgttcaggaaattctttttccactg
ttttttttattttggttaatattaattagcatgatgcatccaaataagaaatatggagaa
gtgcctgatacagaacttaatcccatggacaagtctatcctttctaatcttattcttgga
tacactccagtaacaaatattacaagtgacatcatgcagagagtgtctacagatcacctt
caagatgtcataatcactgaggagtatgaaaatgagaaagaaatggtggcatcgagtcat
tttaaatccagcaactttgtaggtgtggtttttaaagactcaatgtcctatgagcttcgt
ttctttcctgatatgattccggtatcttccatttatatggattcaagagctggctgttca
aaatcgtgtgaagctgctcagtactggtcctccgggtttacagttttacaggcatccatt
gatgctgccatcatacagttgaagactaatgtttctatttggaaagagctggagtccact
aaagctattattatgggggaaactgctgttatagaaatagacacctttccccgaggagtc
attttaatatacctggttattgcattttcaccttttggttacttcttggcaattcatatt
gtagcagaaaaagaaaaaaagttaaaggaatttttaaagataatgggacttcatgacact
gccttttggctttcctgggtgcttctgtatacaagcttgattttccttatgtcccttcta
atgtcagtcattgcaacagcttcttcattatttcctcaaagtagcagctttgtaatattt
ctactctttttcttatatggattatcctctgtattttttgctttaatgctgacgccactt
tttaaaaaatcaaaacatgtgggaatagttgaattttttgtcactgtggcttttggattt
attgggcttttgatagtcctgatggaaagttttccaaagtcgttagtttggcttttaagt
ccattctgtcagtgtacttttttgattggtattgcacaggtcatgcatttagaagacttt
aatgaaggtgctttattttctaatttgactgaaggcccatatcccctaattattactatg
atcatgctagcacttaatagcattttctatgttcttctggctgtctatcttgatcaagtc
attccaggggaatttggcttaaggagatcatctttatattttctaaagccatcatattgg
tcaaagagcaaaagaaactataaagagttatcagaaggcaatgttaatggaaatatcagt
tttagtgaaatagttgagcctgtttcttcagaatttgtaggaaaagaagccataagaata
agtggtattcagaagacataccgaaggaaaagtgaaaatgttgaggccttgagaaatttg
tcatttgacatctacgaaggtcagatcactgcattacttggccatagtggaacaggaaag
agtacattgatgaatattctttgtggactatgcccgccttctgatgggtttgcatctata
tatggatacagagtctcagaaatagatgagatgtttgaagcaagaaaaatgattggcatt
tgtccacaattagatatacactttgatgttttgacagtagaagagaatttatcaatcttg
gcttcaatcaaaggaataccagctaacaatataatacaagaagtacaaaaggttttatta
gatttagacatgcaggccatcaaagataaccaagccaaaaaattaagtggtggtcaaaaa
agaaaactgtctttaggaattgctgttcttgggaatccaaagatattgctgctagatgag
ccaacagctggaatggacccctgttctcgccatattgtttggaatcttttaaagtacaga
aaagccagccgagtgactgtgctcagtactcacttcatggatgaagctgacattcttgct
gataggaaagctgtcatatcacaaggcatgttgaaatgtgttggctcttcaattttcctc
aaaagtaaatgggggatcggctatcgcctcagcatgtacatagacagatactgtgccact
gaatctctttcttcattggtcagacaacacatacctggagctactttattacagcagaat
gaccaacagcttgtgtatagcttgcctttcaaagacatggacaaattttcaggtttattt
tctgctctagacattcattcaaatttgggtgttatttcttacggtgtttccatgacgact
ttagaagatgtattcttaaaactggaagttgaagcagagattgaccaagcagattacagt
gtatttacacagcagccaccagaggaagaaatggattcaaaatcttttgatgaagtggaa
cagagcttacttattctttctgaaaccaaagcttctctagtgaataccatgagtctttgg
aaacagcaggtgtctacaatagcaaagtttcatttccttaacttgaaacgtgaaagtaaa
tcagtgagatcagtgttgcttctgcttttaatattttttgcagttcagatttttatgttt
ttggtacatcactcttttaaaaatgctgtggttcccatcaaacttgttccagacttatat
ttactaaagcctggagagaaacaccataagtacaaaacaagcctgcttcttcaaaattct
actgactcagatatcagtgatgttattaactttttcacataccaagacataatggtgaca
atgtttaacgacagtgactatgtatctgctgctccccatagtgcagctttaaatgtggtc
ggttcagaaaaggactatgttttcacagctgttttcaacagtactatggtttattcttta
ccagtattgatgaatattatcagtaactactacctttatcatttaaatgtgactgaaact
atccaggtttggaataccccattctttcaggaaattactgacatagtgtttaaaattgag
ctgtactttcaagcagctttgcttggaatcattgttactgcaatgcctccttactttgca
atggaaaatgcagagaatcataagatcaaagcgtatacgcaacttaaactttcaggtctt
ttgccatctgcatattggattggacaagcaattgttgatatccctttattttttgttgtt
ctcattttgatgctaggaagcttatttgcattccatcatggactatatttttatgctgta
aaatttcttgctgtggttttttgtcttattggttatgttccatcagttattctattcact
tacattgcttcttttacctttaagaaaattttaaataccaaagagttttggtcatttatc
tattctgtgacagcattgacttgtattgtaatcactgaaataaccttcttcatgggatat
acagttacagctgtttttcattacactttttgtatagccattccaatctatccacttctg
ggttgcctcatttcttttataaaggtttcttggaagacaataccaaaacatgagaagact
ttcaatccatgggataggcttttagtagcagttataatgccttaccttcagtgtattctg
tggattttcctcctgcaatattatgagaaaaaacatggaggcagatcaataaggcaggat
ccctttttcaggacattttccagaaagtccaaaaacaaaaagtttccagatcctccaaat
aatgaggatgaagatgaagatgttagagctgaaagactgaaggtcaaagaactgatgagt
tgccaatgttgtgaagagaagccagccatcatggttagcaatttgcataaagaatatgat
gacaagaaagatttcctacattcaaggaaagtaaagaaagtggcaactagatacatctct
ttctgtgtgaaaaaaggagagatcttgggactgttaggtccaaatggtgcaggaaaaagc
acaattattaatattctagttggtgatgtcgagccaacttcaggccaggtgtttctggga
gattatactccagacacaactgaagatgataattacattaagtgtatgggttactgtcct
caaataaacccattgtggccagatattacattgcaggaacattttgaagtttatggagct
gtgaaaggaatgagtgccagtgacatgaaagaagtaataagtcgaataacaaatgctctt
gatataaaagaacatcttcagaaaaccataaagaaactaccttcaggaattaagcgaaag
ttatgctttgctctaagcatgcttgggaatccttcagttactctgttagatgaaccatct
acaggcatggaccctaaagccaaacaacacatgtggcgagcaattcgaactgcttttaaa
aacaaaaaacgggctgctattctgaccacacattatatggaagaagcagaggctgtctgt
gaccgagtggctattatggtgtccgggcagttaagatgcattgggacagtacaacatcta
aagagtaaatttggaaaaggctactttttggaaattaaattaaaagactggatagaaaac
atagaaatagatcgtcttcaaagagaaattcaatatattttcccaaatgcaagccgtcag
gaaagtttttcttctattctggcttataaaattcctaaggaagatgttcagtctctttca
caatgtttttctaaactagaagaagctaaacatacttttgccattgaagaatacagtttt
tctcaagcaacattggaacaggtttttgttgaactcaccaaagagcaagaggaagaagac
aatagttgtggcactttaaatagcacactttggtgggaaagaacacaggaagacagagta
gtattttga
DBGET
integrated database retrieval system
