Dipodomys merriami (Merriam's kangaroo rat): 138810505
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Entry
138810505 CDS
T11079
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138810505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138810505
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138810505
U7-dependent histone pre-mRNA processing factors
138810505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
138810505
NCBI-ProteinID:
XP_069853806
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVLAQQKAMKSLFGDDEKETGEESEVIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacctctattatcaaattaactaccctctcaggggtccaagaagagtcggctctttgc
tatcttctacaggttgatgagtttaggtttttactggattgtggctgggatgagcacttt
tctatggatatcatagattccctaaggaagcatgttcaccagatcgatgcagtactcctg
tctcaccctgatcctctccatcttggtgccctcccatatgctgtggggaagttgggtctg
aactgtgctatctatgcaaccattcctgtttataaaatgggacagatgttcatgtatgat
ctttatcagtctcgacataatacagaagattttacactctttacattggatgatgtggat
gcagcctttgataaaatacagcagctaaaattctctcagattgtcaatttgaaaggtaaa
ggccatggtttgtccatcacacctttgccagctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtttatgcagttgacttcaaccacaagagg
gagatccacttaaatggatgttccttggaaatgctaagcagaccctctctacttatcaca
gattcatttaatgctacatatgtgcagcctagaagaaaacagagagatgagcaacttctg
acaaatgtcctggagacacttcgaggtgatgggaatgtattaatagcagtggacactgca
ggcagagttttggaacttgctcagcttcttgatcagatttggagaactaaagatgcagga
ttgggtgtttattcattggcactcctaaataacgtcagttataatgtggtggagttttcc
aagtcccaggtagaatggatgagtgataagttgatgagatgttttgaagacaaaagaaat
aacccatttcagtttcgccatctctctttgtgccatggtctttctgacttggctcgagta
ccgagtcccaaagttgtacttgccagccagcctgacctggaatgcggattttcaagggat
ctctttattcaatggtgtcaggatcctaaaaactcaatcattctaacttataggacaact
cctgggactttagcacgattcctaatagataatccttctgaaaaagttacagaaatagag
ttgaggaaacgtgtgaagcttgaagggaaagagcttgaggaatacttggaaaaagaaaaa
ctaaagaaagaagctgccaaaaaactggagcaatcaaaagaggcagacatagattccagt
gatgagagtgatgtggaggaagatattgaccagccatcagctcataagacaaagcatgat
ctgatgatgaaaggggaaggtagtcggaaaggaagtttcttcaaacaggcaaagaagtcc
tatcctatgtttcctgccccagaagaaagaattaaatgggatgagtatggagagattatc
aaaccagaggatttcttagtgccagaacttcaagctactgaagaagaaaaaagcaaatta
gaatctggtttgacaaatggggatgaaccaatggatcaagatttatctgatgttcctacc
aagtgtatttctacaacagaatctatagaaatcaaggccagggttacttacatagactat
gaagggcgctctgatggggattccattaaaaaaatcattaatcagatgaaaccaaggcag
ttgatcattgtccatggcccaccagaagccagtcaagatctggcagagtgctgccgtgcc
tttggagggaaagatattaaagtgtacatgccaaagctacatgagactgttgatgccacc
agtgaaactcatatctaccaagtgagattaaaagactcacttgtcagctcccttcagttt
tgtaaggccaaagatgcagaattagcatggattgatggtgtcttagacatgagggtttcc
aaagtggacacgggcgttattttggaagaaggagagctcaaggatgatggagaggactca
gaaatgcaagtagatgcgccttcagattccagtgttctagcacagcagaaagccatgaaa
agcctgtttggagatgacgagaaagaaaccggggaggagagtgaggtcatccctactctg
gaacccttgccacctcacgaggttcctggacatcaatctgtttttatgaatgaaccaaga
ctatcagacttcaagcaagttcttttgcgggaggggattcaagctgaatttgttggaggt
gttcttgtgtgcaacaatcaagtagcagtccgtagaacggaaactggacgcatcggatta
gaaggctgcctttgtcaagacttttataggataagagaccttttatatgaacagtatgcc
attgtgtaa
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