KEGG   Dipodomys merriami (Merriam's kangaroo rat): 138810845
Entry
138810845         CDS       T11079                                 
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
dmer  Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:dmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    138810845 (Taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dmer03021]
    138810845 (Taf5l)
   03036 Chromosome and associated proteins [BR:dmer03036]
    138810845 (Taf5l)
Transcription machinery [BR:dmer03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     138810845 (Taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     138810845 (Taf5l)
Chromosome and associated proteins [BR:dmer03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     138810845 (Taf5l)
    STAGA complex
     138810845 (Taf5l)
    TFTC complex
     138810845 (Taf5l)
    SAGA complex
     138810845 (Taf5l)
    SLIK complex
     138810845 (Taf5l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_DCAF4 Tricorn_2nd RMC1_N Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_RFWD3 PROPPIN PEP5_VPS11_N WD40_like Beta-prop_IP5PC_F Ge1_WD40 WD_LRWD1 Nbas_N vATP-synt_AC39 Mala_s_1-like Cytochrom_D1
Other DBs
NCBI-GeneID: 138810845
NCBI-ProteinID: XP_069854275
LinkDB
Position
Unknown
AA seq 589 aa
MKRVRTEQVQVAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANVVSA
APCQAEPQQYEIQFGRLRSFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQSSPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLTVHIHLDVQPAKRTDYQLYASGSSSRSESSGLEPPEMPSPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDSSCIKLWSLRST
KLKSEPHHVDASRIHLACDALEEEEDEDDSVGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLVASASMDNSVRVWDIR
NTCCSAPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgcgtgcgcacggagcaagtccaggtggcagtgtcctgctacctcaagcgccgg
cagtacgtggactcagacggccccctgaagcaaggtctgcgactctcacagaccgctgag
gagatggctgccaacctcacagtccagtcagaatctggttgtgccaatgtggtgtctgca
gccccatgccaggcagaaccccagcaatatgaaatacagtttggacgactgcggagtttt
ctcacagactctgactcccaacacagccatgaagtgatgcctctcctctaccccctcttt
gtctacctccatctcaacctggtccagagcagcccaaagagcactgtggaaagcttctac
agccgcttccatgggatgttcctgcagaacgcaagccagaaggacgtcattgagcagctg
cagaccactcagaccatccaggacatcctgtccaacttcaagctccgggcattcctagac
aacaagtatgtggtccgtctccaagaagacagctacaactacctgatccgctacctccag
agtgacaacaacactgccttgtgcaaggtcctcactgtgcacattcacctggatgtgcag
cctgccaagaggacagactaccagctctatgccagtggcagctcctcccgcagtgagagc
agtggcctggagcccccagagatgcccagccctattctgcagaacgaagctgccttggag
gtcttacaggagagcatcaagcgtgtcaaggacgggcctccctccctcaccaccatctgc
ttctatgccttctataacacagagcagctgctgaacacggcagaaatctctcctgatagc
aagctgcttgctgctgggtttgacagctcctgcatcaagctgtggagcttgcggtccacg
aaactgaagtcagagccccaccatgtagacgcctcccgcatccacctggcttgtgacgct
ctggaggaggaggaggacgaggatgacagcgtgggcacagaaatgaagattctgcggggc
cattgtggaccagtatacagcacacggttccttgcagacagctctgggttgctgtcttgc
tctgaagacatgtctattagatattgggacctcgggagtttcaccaacactgtgttgtac
caagggcacgcctaccctgtgtgggacctggacataagtccgtatagcctgtactttgcc
agcggctcccatgaccgaacagccaggctgtggtcctttgaccggacgtatcccctgagg
atatatgcagggcacctggcagatgtggactgtgtcaaatttcaccctaactcaaactac
ctagccactggctcaactgacaagacagtccggctgtggagtgcccagcaggggaactca
gtgcgactcttcacagggcaccgtggccctgtgctctcccttgccttttctcccaatggt
aagtacttggcctctgcaggcgaggaccagcggctgaagctgtgggacttggcctctggg
actctttttaaagaattgagaggccacacagacagcatcaccagcctggccttcagccca
gacagcggcctggtcgcctctgcctccatggacaactctgtacgtgtctgggacatcagg
aacacatgctgcagtgcgcccgctgacggctcctccagtgagcttgtgggagtgtacaca
gggcaaatgagcaatgtcctgagtgtgcagttcatggcctgcaacctactgctggtgact
ggaatcacacaggaaaatcaagaacactga

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