Dipodomys merriami (Merriam's kangaroo rat): 138812154
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Entry
138812154 CDS
T11079
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138812154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138812154
03012 Translation factors [BR:
dmer03012
]
138812154
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138812154
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
138812154
Translation factors [BR:
dmer03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
138812154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
PhoH
DUF6782
ResIII
AAA_23
Motif
Other DBs
NCBI-GeneID:
138812154
NCBI-ProteinID:
XP_069856184
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MSFDYHQSWGREGGTRGSGGGHGGGRGPGGGRGGGGRGGRGPHPGHLKGREIGLWYAKKQ
MQRNREAERQERAVVHMDERREEQIVQLLNSVQAKSDKDPEAQISWFAPEDHGYGAEVSA
AKKTNSEKKVDKQEKKLMSQEKKILRIRDKSTFERDSEYLLQENEPDSTLDQKLLEDLQK
KKSDARYIEMQRFREKLPSYGMQKELVTLIDKHQVTVISGETGCGKTTQVTQFILDSYIE
RGMGSACRIVCTQPRRISAISVAERVAAERAESCGNGNSTGYQIRLQSRLPRKQGSILYC
TTGIILQWLQSDSLLSSVSHIVLDEIHERNLQSDVLMTVVKDVLNYRSDLKVILMSATLN
AEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPEQKEHRSQFKRGFLQGHVNRR
EKEEKEAIYKERWPDYIRELRGRYSPSTISALEMMDDDKVDLNLIAALIRHIVLKEEDGA
ILVFLPGWDNISSLHDLLMSQVMFKSDKFIIIPLHSLMPTVNQTQVFKRTPPGVRKIVIA
TNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMAAEWVSKANAKQRKGRAGRVQPGH
CYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAHFLSRLMDPPSSEAVLLS
IKHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDP
FVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSSNT
LQMLHDMKGQFAEHLLGAGFVSSRSPKDPKSNINSDNEKIIKAVICAGLYPKVAKIRLNL
GKKRKMVKVHTKSDGLVAIHPKSVNVEQTDFRYNWLMYHLKMRTSSIYLYDCTEVSPYCL
LFFGGDISIQKDNDQETIAVDEWIVFQSPARIANLVKELRKELDLLLQEKIENPHPVDWK
DKASRDCAVLSAILDLIKTQEKAVPRSLPPRHQDGWSS
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgactaccaccagagctggggccgcgaagggggcacccgcggctcgggcggc
ggccacggaggcggccgcggcccgggcggagggcggggcggcggcgggagaggcggccgc
ggcccgcaccccgggcacctgaaaggccgcgagatcggcctgtggtacgcgaagaagcag
atgcagaggaaccgggaagccgagcggcaggagagagctgtagtgcatatggatgaaaga
cgagaagagcaaattgtgcagctgctgaactctgtccaagctaagagtgataaagaccct
gaagctcagatttcctggtttgctcctgaggatcatggatatggtgctgaagtttctgct
gcgaaaaaaacaaactcagagaagaaagttgacaaacaggaaaagaaattgatgagccaa
gaaaaaaagatacttagaattagggataaatccacctttgaacgagattctgagtatctt
ttgcaagaaaatgaaccagattcaaccttagaccaaaaattactggaagatttacaaaag
aagaaaagtgacgctcggtatattgagatgcagcgtttcagagaaaagctgccttcctat
ggaatgcagaaggagttggtgactttgattgataagcatcaggtaaccgtgataagtggt
gaaactggttgtggcaaaaccacccaggtcactcagttcatcttggacagctacattgag
cggggcatgggctctgcatgcaggattgtctgtacccagccacggaggatcagcgccatc
tctgttgcagagcgagtggctgctgagagggcagagtcctgtggcaatggtaatagcact
ggataccagattcgtctccagagtcggttgccgagaaagcagggttccatcttgtattgt
accacaggaatcatcctgcagtggctccagtcagactcgcttttgtccagtgttagtcat
attgtacttgatgaaattcatgaaagaaatctgcagtcagacgttttaatgactgttgtt
aaagacgttcttaattaccgatctgacctaaaagtcattttgatgagtgcaacattgaat
gctgagaagttctcagaatattttggaaactgtccaatgatacacattcctggtttcact
ttcccggttgtggaataccttctggaggatatcattgaaaaaataagatatgtgccagaa
cagaaagagcacagatcccagtttaagaggggtttcctgcaaggccatgtaaatagaaga
gaaaaagaagaaaaggaagcaatctataaggagcgctggccagactatatacgagaactg
agaggaaggtattctccaagtactatcagtgctttggaaatgatggatgatgataaagtt
gatctgaatttgattgctgctctgattcgacacattgttttgaaagaagaggatggagcg
attctagtcttcctgcctggctgggacaacatcagcagtctacatgatctcctgatgtcc
caggtgatgtttaagtcagataagtttattattatccctctacattcactaatgccaacg
gtaaaccagacacaggtgtttaaaagaactcctcctggtgttcggaaaatagtaattgct
accaatattgcagagactagcatcaccattgatgacgtagtgtatgtgatagatggagga
aaaattaaagaaacacattttgacactcagaacaacatcagcacgatggctgccgagtgg
gtcagtaaagcaaatgccaaacagaggaaaggccgcgctggcagagtccagcctggtcac
tgctatcatctgtataatggccttagagccagtcttctagatgactatcagctgccagag
attctaagaacgcctctggaagaactttgtttgcaaataaagatcttaaggcttggtgga
attgctcattttctgagtcggttaatggaccctccgtccagcgaggcagtgctgctctcc
ataaaacacctcatggagctgaatgctttggacaaacaggaagaattgacccctcttggt
gtccacttggcccgattgccagttgagccacatatcgggaagatgattctcttcggagct
cttttctgttgtttagacccagtgctcactattgcggctagtctcagcttcaaagatccc
ttcgtgattccattggggaaagaaaagattgcagatgccagaagaaaggaactggcaaag
gaaactagaagtgatcacctgacagttgtaaatgcatttgagggctgggaagaagctagg
cggcgtgggttcagatacgaaaaggattactgctgggaatatttcctctcttcaaacaca
ctgcagatgctgcatgacatgaaagggcagtttgctgagcacctgcttggagctgggttt
gtaagcagcaggagccccaaagaccccaaatccaatataaactcagataatgagaagata
atcaaagctgtcatctgtgctggcttatatcccaaagttgctaaaattcgactaaatctg
ggtaaaaaaagaaaaatggtgaaagttcataccaagtctgatggtctggttgcgattcac
cccaaatcagtgaacgtggagcagaccgacttccgctacaactggctcatgtaccacctc
aagatgaggaccagcagtatctatttgtatgactgcaccgaggtctccccgtactgcctc
ttgttcttcggtggcgatatctccatccagaaggacaatgaccaggaaaccatcgctgtg
gacgaatggattgtgttccagtccccagccagaattgccaacctcgtgaaggagttaagg
aaggaactggacttgctgctgcaggagaagatcgagaaccctcaccctgtggactggaag
gacaaggcatccagagactgtgccgtgctctctgctattctggacttaatcaaaacccag
gagaaggcggttccccggagcctgcctccccgccaccaggacggatggagcagctga
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