Dipodomys merriami (Merriam's kangaroo rat): 138813336
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Entry
138813336 CDS
T11079
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
138813336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmer03000
]
138813336
Transcription factors [BR:
dmer03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
138813336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
138813336
NCBI-ProteinID:
XP_069857860
LinkDB
All DBs
Position
Unknown
AA seq
2530 aa
AA seq
DB search
MKPMKKACTSLPGPGSGSKSPPATRAKALRRRGAGESDKPEEDEEETQPQQQPGPEEAEE
GEEEEAAERGSGAEGPPPELHPSDPASGPAEDPKGDGEAGRWEPSLSRKTATFKSRAPKK
KYVEEHSAAGGGVTGAPEEQQERTPEEASVLGVPPQPPASTRSSSTDTASEHSADLEEES
AEACGPGPWPLGGPSGGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRA
LTFYEGLPGSGVDVVLDATPPPGALVVGTAVCTCVEPGVAAYREGVVVEVATKPAAYKVR
LSPGPGSQAGPPGSLPQPQPPLHNREPEEAVWVARSSLRLLRPPWEPEVLLRKPPIGPEE
EQAEPGTTLPPCPAPLDPKQPEDAEVSKISFGGTLGVHCEEGEEKHPPALGTPALLPLPP
PQLLSPPPKSPAFAGPGRPGEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQ
QKYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADG
GPGGAGRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECE
AAVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAV
RSRHLSASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTEL
LPHPGALGAPGAGGGGAAPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSRQ
PSPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFSGEVGTAGEVRAGG
PGRGCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTFGLASSPFQPVAF
HPSPAALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQP
DPSVQPSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGTGNADPGRPPGATCPESPGPG
PPHTLGMVEPGKGPLPTTEEETPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKR
RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT
VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPASLGLA
GGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDSKAAGSGPCGAERLHAVGGPGS
ARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPTSFSGPKPSTQYGTPGPFAAPGEGGA
LAASGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKE
RVTDSESGDSSGEDPEGNKGFGRKLFSPVIRSSFTHCRPTLDPEPPGPPDPPAAFGKGYG
PTSSSSSSPATTSTSVANSFSLGSGSFKAQESGQGSTTGPLRPPPPGPGGPATPSKATRF
LPSDPASFRRKRPESVGSLEPSGPSVIAVPPSGGGTILQTLVLPQNKEDREGSGARVPSA
SAPSLSYGASAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPSSGRAEASPNDTAGARTE
MSTGSRVPGGSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGY
GAPAPPAVQFIAQGAPGGGPTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILP
TLPQQLQVAPAPGPPAPGAKAAAPTGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPIL
QSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGPGQPLPLVSPPF
SVPVQNGAQPPSKIIQLTPVPVSTPGGLVPPLSPASLPGPTSQPQKVLLPSSTRITYVQS
AGGHTLPLGTSPASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQ
VGVSPVPSPQLPPACTAPGGPVITAFYPGSPASTSAPLAQPAQAPPSLVYTVATSTTPPA
ATILPKGPPAPATATPAPTSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVG
SFEAGASGRSGPAPRQPLEPGPTREPTAPESELEGQPTPPAPPPPPETWPPSARSSPPLP
LPAEERPGTKGPETMVCSPFLSSSQPSKFSSSSSDWRVPGLGLESREPPTPPSPAPAPAP
GSSSGGSLEGSGGRGAGDTPERKEVAGAGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERF
AELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSS
CSSEPNTPKSAKCEGDIFTFDRTAGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLF
QDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPGP
PPAGTAATPAPTPSPAGGPDPTSPGPDSGTAQAAPPLPPPPEPGPGQPGWEGPPQPSPPP
SGPSTTATGR
NT seq
7593 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatgaagaaggcatgcactagtcttccaggtcctggtagtggcagcaagtcc
ccaccagccaccagggccaaggccctaaggcggcgaggggctggggagagtgacaagcca
gaggaggacgaggaggagactcagccacagcagcagcctgggccagaagaggctgaagag
ggcgaggaggaggaggccgctgagcggggttctggggctgaggggccgcccccagaacta
caccccagtgacccagcctcaggcccagccgaggaccccaaaggggatggggaggcaggc
cgctgggagccctcactcagccgcaagacagccacgttcaagtctcgagcccctaagaag
aagtacgtggaggagcacagtgctgctggtgggggggtgacgggggctcctgaagagcag
caagagcggacccctgaggaggccagtgtcctgggggtacccccccagccacctgcttcc
acccgctcctcttccactgacacagccagtgagcactcggccgacctggaggaggagtct
gctgaggcctgtggtccagggccctggcctctgggtggccccagtggtggctatgacctg
cggcagctgcggtcccagcgggtgctggcgcggcgtggtgatggcctcttcctgccggca
gtggtgcgccaggtgcgccgaagccaggacctaggtgtgcagttccctggcgatcgagcc
ttgactttttacgaggggcttccgggcagtggcgtagatgtggttttggatgccacgccg
ccaccaggtgcgctggtggtgggcacagccgtctgtacctgtgtggaacccggggtggca
gcctaccgtgagggtgtggtggtggaagtggccacgaagccagccgcctacaaggtccgc
ctcagccctggccctggctcccaggcaggccccccgggctccctgccacagccccaaccg
ccgcttcacaaccgggagcccgaagaagccgtgtgggtggcccgctccagcctgcgcctg
ctgcggcccccctgggagcccgaggtcctgctgaggaagccccccattgggcctgaagaa
gagcaagccgagccaggaaccaccctgccgccctgcccagctcccctggaccccaagcag
cctgaggatgctgaggtctccaagattagcttcggtggtaccctgggcgtccactgtgag
gagggtgaggagaagcacccaccagccctgggcaccccagccctgctcccgctgccccca
ccccagctcctgtccccaccccccaagtccccagccttcgctggccctggtcgccctggg
gagcagccttcgccctgccaggaagggagccagggtggcagccggagcagcagcgtggcc
tcgctggagaagggggccgccccagcagcccgggcccgcaccccactgacggctgcccag
cagaaatacaagaagggcgacgtggtctgcacacccaatggcatccgcaagaagttcaac
ggcaagcaatggcggcggctctgctctcgtgatggctgcatgaaggagtcacagcggcga
ggctactgctcccgccacctgtccatgcgaaccaaggagatggagggcctggcagacggc
gggcctggtggggccgggcggccagctggtgtggcagcccgggagggcagcaccgagttt
gactggggggacgagacatcaagggacagcgaggccagcagtgtggctgcccggggtgac
tcgcgcccgcgcctggtggcccccgcggatctgtcacgcttcgagtttgatgagtgtgag
gcagccgtgatgctcgtgtcgctgggcagctcccgttcgggcacgccctccttctccccc
gtctccacgcagtcgcccttctcgccagccccctcgccctcaccttcgcccctctttggc
ttccgcccggccaacttcagccccatcaacgcctcgcctgtcatccagcgcacagctgtt
cgcagccgccacctgagtgccagcaccccaaaggctggcgtgctgacgccccccgacctg
ggcccccacccgccgccacctgccccccgagaacgtcattcctccggcatccttcccact
ttccaaaccaacctaacctttactgtgcccatcagccctgggcggcgcaagaccgagctg
ctgccccacccaggggcattgggggcccctggagcaggaggtgggggtgctgccccagac
ttccctaaaagtgacagcttagactctggtgtggactcagtgtcccacacgcctaccccc
tccacaccggctggcttccgggctgtgtcacctgccgtgcccttctcacgctcccgccag
ccttcaccgttgctgctgctgcccccgcctgctggcctgacctcagatccagggccctcc
gtgcgcagggtgcccgcagtgcagcgggactcgcccgtcatcgttcgcaaccctgatgta
ccactaccctccaagttctctggagaggtgggcacggccggtgaggtccgggctggggga
cctgggcggggctgccgggagactccggtgccccctggggtggccagtggaaagcctggc
ctgcccccacctctgcccgctccggtgcccatcactgtgcctccagccgcacccaccgct
gtggcccagccgatgcccacctttggcctggcttcgtcacccttccagcctgtggccttc
cacccctcacccgctgccctgttgccggtcctcgtgccaagcagctataccagccatcct
gcccccaagaaggaagtcatcatgggccggcctggaacagtgtggacaaacgtggaacct
cgttctgtggccgtgttcccctggcactccttagtccctttcctggcacccagccagccg
gacccctctgtgcagcccagtgaggcccaacaacctgccagccacccagtggcttccaac
cagagcaaagaacctgctgagtcagcagctgttgctcatgagcagccaccaggaggcaca
ggaaatgctgaccctgggcggccccctggggccacatgccctgagagcccagggcccgga
cccccacacactttggggatggtggaacctggtaaaggtccccttcctactactgaggag
gagacccctggccccccgggagagccccgtctggacagtgaaacagagagcgaccatgat
gatgccttcctgtccatcatgtctcctgagatccagttgcctctgccacctggaaaacgg
cggacccagtccttgagtgctttgcctaaggaacgagactcatcttctgagaaagacgga
cgcagccccaacaagcgggagaaggaccatatccgtcggcccatgaatgccttcatgatc
ttcagcaagcggcaccgggccctggtccaccagcgtcacccaaaccaggataaccggact
gtcagcaagatcctgggcgagtggtggtatgcccttgggcccaaggagaaacagaagtac
cacgatctagccttccaggtgaaggaggcccacttcaaggcccacccagattggaagtgg
tgcaacaaggaccgaaagaagtccagctcagaggccaagcccgcgagcctggggctggca
ggagggcacaaggagacgcgggagcggagcatgtcggagacgggcactgcggccgcccct
ggggtgtcctctgagctcctgtcagttgcagcccagacactcttgagctcagacagcaag
gctgcagggagtggcccatgtggagcagaacggctgcatgctgttgggggccctggctcg
gcccggccgcgggccttctcccacagtggtgtgcacagcctggatggcggggaggtagac
agccaggcgctgcaagaactcactcagatggtgtctggccccacatcgttctcgggccca
aagccttccacccagtatggcactccgggccctttcgcagcccctggtgaaggaggcgcc
ttggcggccagcgggcggcccccactgctacccacccgagcctctcgttcccagcgtgca
gccagcgaggacatgaccagtgatgaggaacgcatggtcatctgtgaggaggaaggggac
gatgatgtcattgctgacgatggctttggcaccactgacattgatctcaagtgcaaggag
cgggtgactgacagtgaaagtggcgacagttctggggaggacccagagggcaacaagggc
tttggccgtaagttgttctcacctgtgatccgctcctcttttacccactgccgtcccaca
ctggatcccgagccaccaggtcccccggatccacctgcagcctttgggaaaggctatggt
cccacgtcatcctcttcctcctcacctgccaccacctcaacctccgtagccaactctttt
tcactgggctctggaagcttcaaggcccaggagtctggtcagggcagcacaacaggcccc
ctacggccaccaccccctggacctggaggccctgccacaccttccaaggccacacggttt
ctaccatcggaccctgcctccttccggcgcaagagacctgaaagtgtgggcagcctggag
ccatcaggcccctctgtgattgcagtgcctcccagcgggggaggaaccattctgcaaaca
ctggtcctgccccaaaacaaggaggaccgggagggcagcggagcccgtgtgccctcagct
tctgccccatcgctgtcttacggggcctcggcagcgcctctgtcccgccctgcagccacc
atggtcaccaatgtggttcggcccgtcagcagcactccggtacccatcgcctcgaagccc
ttcccctcctctggccgagccgaggcatctccaaatgacacagcaggtgccagaactgag
atgagcactggctcccgggtgcccgggggctccccgctgggggtcagcttagtctattcg
gacaagaagtcagcagctgccacttcacctgccccacacttggtggctgggcccctgttg
ggcactgtggggaaagcccctgccactgtcaccaacctgctggtgggcacccctggctat
ggagcccctgcaccccctgctgttcagtttattgcccagggagcgccgggcggtggcccc
actgcaggctcaggagcaggtgctggaagcggccccaatgggccagtacccctgggcatc
ctgcagccaggggccctgggcaaggctgggggaatcacccaggtgcagtatatactgccc
acgctgccccagcagcttcaggtggcacctgccccaggaccaccagctcctggggccaag
gcagcagctcccactggccccgcacccaccaccagcatccgtttcaccctcccacccggc
acctccaccaacggcaaggtcctggctgccactgcacccactcctggcatccccatcctg
cagtctgtaccctccgccccaccccctaaagcccaatcagtttctcccgtgcaggccccg
cccccaggtggctcagcccagctgctgccagggaaggtgctggtgcccctggctgccccc
agcatgtcagtacggggtggggggcctggccagccactgcccctggtgagcccacctttc
tcagtacctgtgcagaatggtgcccagccacccagcaagatcatccagctgacgcctgtg
cctgtgagcacacctggcggcctggtgccgcccctgagcccagcctcgcttcccggaccc
acctcccagccccagaaggtcttgctgccttcctctaccaggatcacctacgtgcagtcg
gcaggcgggcacactctgcctctgggtaccagccctgcatccagccaggctggaactgtc
acctcatacgggcccacgagctctgtagcactcggcttcacctcgctggggcccagcggc
cccgcctttgtgcagcccctgctctcagcaggccaagcccctctcctggctcctggccag
gtgggcgtgtcacctgtgcccagtccccagctgcctcctgcctgcacagcccccggaggc
cccgtgataactgcattttaccctggcagccccgcctccacctcggcacccctggcccag
ccagcccaggccccaccaagcctggtctacaccgtggccaccagcaccaccccacctgct
gccaccattctgcccaaaggcccaccagcccctgccactgccacccccgcccccactagc
cctttccctagtgccacagcaggctccatgacctacagtttagtggcccccaaggcccag
cggcccagcccgaaggccccccagaaagtgaaggcagccatcgccagcattcccgtgggc
tcctttgaagcaggtgcctccgggcggtctggccctgcaccccggcagcctctggagcct
ggccccacccgggagccaaccgccccagagtctgagctcgaagggcaacccacaccaccg
gcccctccgccacccccagagacctggcctcccagtgcccggagcagcccccctctcccc
ctcccagccgaggagcggccaggaaccaagggccccgagaccatggtgtgttctcccttt
ctgtcctcatcccagcccagcaaattctccagttcatcctccgactggcgggtccctggg
ctgggcctggagagccgggagccccccactcctcccagcccagccccagccccggcccca
ggcagtagcagtggtggcagtcttgagggcagcggtggaaggggggctggagacacccca
gagcgcaaggaggtggctggtgctggcaagaaggtgaaggtgcggcccccgcccctgaag
aagaccttcgactcagtggacaacagggtcctgtccgaagtggactttgaggagcgcttt
gctgagcttcccgagtttcggccggaggaggtgctgccctcccccacgctgcagtctctg
gccacctctccccgggccatcctgggctcttacagaaagaagaggaagaactccaccgac
ctggactcggcgcccgaggaccccacctcacccaagcgcaagatgaggaggcgctccagc
tgcagctccgagcccaacaccccaaagagtgccaagtgtgagggggacatcttcaccttt
gaccgcacagcaggtaccgaagctgaggacgtgctgggggagctggagtatgagaaggtt
ccctactcttcgctgcgccgcaccctggaccagcgccgcgccctggtcatgcagctcttc
caggaccatggcttcttcccatcagctcaggccacggcagccttccaggcccgctatgcc
gacatcttcccatccaaggtttgtctgcagctgaagatccgtgaagtgcgccagaagatc
atgcaggcagccacccccacagagcagccccctggagctgaagcccccctccctggacca
cctccagctggcactgctgctacccctgctcccactcccagccctgctggcggccctgac
cccacctcccctggcccggactctggcactgcccaggctgccccgccactgcctccaccc
ccagagccagggcctggacagcctggctgggaggggcccccccagccctctccccctccc
tctggcccctccacaactgccaccggcaggtga
DBGET
integrated database retrieval system
