Dipodomys merriami (Merriam's kangaroo rat): 138813857
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Entry
138813857 CDS
T11079
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138813857 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138813857 (Xab2)
03041 Spliceosome [BR:
dmer03041
]
138813857 (Xab2)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138813857 (Xab2)
Spliceosome [BR:
dmer03041
]
Complex B
Other components
Prp19-related factors
138813857 (Xab2)
Complex C
138813857 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
TPR_21
Motif
Other DBs
NCBI-GeneID:
138813857
NCBI-ProteinID:
XP_069858484
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARLSRSERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDQALRLLRKATALPARRAEYFDSSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLC
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQNKILFVRSDASREELAELTQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactctcgcggtccgagcggccggaccttgtcttcgaggaagag
gatcttccttacgaagaagaaatcatgagaaaccagttttcagtcaaatgctggctccgc
tacattgagtttaaacagggtgccccaaaaccccggctcaatcagctgtatgagcgggca
ctcaagctgctcccctgcagctataaactctggtaccgctacctgaaggcacgtcgggca
caggtgaaacaccgttgtgtgactgatcctgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgttcatgcacaagatgccccgtctatggctggattactgccagttcctc
atggaccagggacgcgtcacacatacccgccgcacctttgaccgtgccctaagggccctg
cccatcacccagcactctcgcatttggcccctgtacctgcgcttcctacgctcccacccg
ctgcccgagactgccgtgagaggctaccggcgcttcctcaagctgagtccagagagtgcc
gaggagtacatcgagtacctcaagtcgagtgacaggctggacgaggccgcccagcgcctg
gccaccgtggtgaatgatgagcgctttgtgtccaaggctggcaaatccaactaccagctg
tggcatgagctgtgcgacctcatctcccagaacccagacaaggtgcagtccctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggccgactactacattcgcagtggccactttgagaaggcccgggatgtgtacgag
gaggccatccgcacagtgatgaccgtacgggacttcacacaagtgtttgacagctatgcc
cagtttgaggaaagcatgatcgctgccaagatggagacggcctcggagctggggcgggag
gaggaagacgacgtggacctggagctgcgcctggcccgcttcgagcaactcatcagccgg
aggcccctgctgctcaacagcgtcctgctgcgtcagaacccacaccatgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgtccccgggagatcatcaacacgtacaccgag
gcagtgcagactgtagaccccttcaaggccacgggcaagccccacacattgtgggtcgcc
tttgccaagttttatgaagataacgggcagctggatgatgcccgagtgatcctagagaaa
gccaccaaggtgaacttcaagcaggttgatgacctggccagcgtgtggtgccagtgtggt
gaactggagctccggcacgagaattatgaccaggccttgcggctgctgcggaaggccaca
gcactgcccgcccgccgagccgagtactttgacagctcagaacctgtgcagaaccgcgtg
tacaagtctttgaaagtgtggtcaatgctcgccgacctggaggagagtctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacaccacagatc
gtcatcaactatgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcg
tacgagcgcggcatctccctgttcaaatggcccaatgtgtcggacatctggagcacctac
ctgaccaagttcatcgcccgctacgggggccgcaagctggagcgggcacgtgacctgttc
gagcaggcgctggatggctgcccccctaaatatgccaagaccctgtacctgctgtatgca
cagctagaggaggagtggggcctggcccggcatgccatggccgtgtacgaccgcgccacg
cgggctgtggaacctgcccagcagtacgacatgttcaacatctacatcaagcgggctgcg
gaaatctatggcgtcacgcacacgcgtagtatctaccagaaagccatcgaggtgctgtgc
gatgagcacgcccgggaaatgtgcctgcgcttcgctgacatggagtgcaagctgggcgag
atcgaccgtgcccgggccatttacagcttctgctcccagatctgcgacccccggaccaca
ggggccttctggcagacgtggaaggactttgaggtgcggcatggcaacgaggacaccatc
agggaaatgctgcggatccgccgcagcgtgcaggccacctacaacacgcaggtcaacttc
atggcctctcagatgctcaaggtgtcgggcagcgccacgggcactgtctccgacctggcc
cctggacagagtggcatggatgacatgaagcttctagaacagagagctgagcagcttgca
gccgaggccgagcgggaccagccctcacgggcccagaacaagatcctctttgtgaggagc
gacgcgtcccgagaggagctagcggagctgacccagcaggtcaaccccgaggagatccag
ctgggtgaagatgaagacgaagacgagatggacctggagcctaatgaggtccggctggag
cagcagagcgtgccagctgcagtgttcgggagcctgaaggacgactga
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