Dipodomys merriami (Merriam's kangaroo rat): 138813975
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Entry
138813975 CDS
T11079
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04151
PI3K-Akt signaling pathway
dmer04382
Cornified envelope formation
dmer04510
Focal adhesion
dmer04512
ECM-receptor interaction
dmer04820
Cytoskeleton in muscle cells
dmer04926
Relaxin signaling pathway
dmer04933
AGE-RAGE signaling pathway in diabetic complications
dmer04974
Protein digestion and absorption
dmer05146
Amoebiasis
dmer05165
Human papillomavirus infection
dmer05200
Pathways in cancer
dmer05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
138813975 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138813975 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138813975 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138813975 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
138813975 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
138813975 (Col4a1)
09158 Development and regeneration
04382 Cornified envelope formation
138813975 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
138813975 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
138813975 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
138813975 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
138813975 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
138813975 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dmer04147
]
138813975 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
dmer00536
]
138813975 (Col4a1)
Exosome [BR:
dmer04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138813975 (Col4a1)
Glycosaminoglycan binding proteins [BR:
dmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138813975 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138813975
NCBI-ProteinID:
XP_069858727
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MGPRLGVWLLLLPAALLLHEERSRAAAKGGCAGSGCGKCDCQGVKGQKGERGLPGLQGVI
GFPGMQGPEGPHGPPGQKGDAGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGQVPGMLLKGERGFPGH
PGLPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGDQGVSGPP
GVPGQAQVKEKGDFAPTGEKGQKGEPGFQGMPGFGEKGEPGKPGPRGKPGKDGEKGEKGS
PGFPGDSGYPGLPGQIGPQGEKGDVGLPGPPGIVIGTGPLGEKGERGYPGTPGSRGEPGP
KGYPGLPGQPGPPGLPVPGQVGPPGFPGERGEKGSQGLPGVSLPGPSGRDGAPGPPGLPG
PPGQPGHTNGIVECQPGPPGDQGPPGIPGQQGLTGEMGEKGQKGDSCLACDTEGLQGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIYFDMRLK
GDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDI
GPPGPPGFGPIGPIGDKGQAGFPGSPGSPGLPGPKGEAGKVVPLPGPPGAEGLPGAPGFP
GPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDAGPPGSPGRPGFNG
LPGSPGVPGQKGEPGIGLPGIKGQPGLPGIPGTPGEKGSIGGPGVPGEHGLIGPPGLQGV
RGDPGPPGVQGPAGPPGAPGVGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGAQGLPGLTGQTGLPGPPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGVPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDIGLPGKPGSMDKVDMGSMKGEKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPG
TPGEKGVPGIPGPQGIPGIPGEKGAKGEKGQAGLPGIGLPGRPGDKGDPGLAGFPGSPGE
KGQKGSTGIPGMPGSPGPKGLPGSIGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGT
PGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSP
GIPGSKGEQGFMGPPGPQGQPGLPGTPGRPVEGPKGDRGPQGQPGLPGLPGPMGPPGLPG
LDGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQKG
LPGLQGLKGDQGDQGIPGSKGLPGPPGPPGPYDVLKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSAGVPGPPGAPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTEDPSCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDGIRPFISRCAVCEAPAMVMAV
HSQTIQIPPCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcggcgtctggctgctgctgctgcccgccgcccttctgctccacgag
gagcggagccgggccgccgcgaagggtggctgtgctggctccggctgtggcaagtgtgac
tgccaaggagtgaagggacaaaagggagaaagaggcctcccaggattacaaggtgtcatt
gggtttccgggaatgcagggacccgaggggccacatggaccaccaggacaaaagggcgat
gctggagagccaggacttccgggcacaaaagggacaaggggacccccaggagcagccggt
taccctggaaacccaggacttcctggtattcccggccaagatggtcccccaggaccccca
ggtatcccaggatgcaacggtacaaagggagagaggggcccgcttgggcctcctggcctg
ccaggcttcagtggaaatcccggaccacctgggttaccagggatgaagggagatccaggt
gaaatacttggccaggtgcccgggatgctgttgaaaggagagcgaggatttcctggccat
ccagggttacctggctcacccggattgccaggccttcagggacctgttggccctcctgga
tttaccggaccgccgggtccgccaggccctcctggtcctccaggtgaaaagggacaaatg
ggctcaagttttcaaggaccaaaaggggacaagggcgatcaaggggtcagtggacctcca
ggagtaccaggacaggcacaagttaaagagaaaggggactttgccccaacgggagaaaag
ggtcaaaaaggtgaacctggatttcagggaatgccaggctttggagaaaaaggtgaaccc
ggaaagccagggccccggggaaagcctgggaaagacggggagaaaggagagaaggggagt
ccgggctttcctggcgactcggggtacccaggactcccaggccagataggcccacagggt
gagaaaggcgatgttgggcttccaggccctccaggaattgtcataggcaccgggcccctg
ggggaaaaaggagagcgaggctacccaggaactcctggctcgagaggagaaccaggccct
aaaggttaccccggattaccaggccagccaggacctccaggtctccccgtcccaggccaa
gtgggccctcctggcttccccggggagagaggagaaaaaggcagccaaggccttccggga
gtgtctttgccaggaccaagtggaagagacggagcccctggcccccctggcctccccggg
ccccctgggcagccaggccacaccaatggcattgtggagtgccagcctggaccgcctggg
gaccagggccctccaggaattcccgggcagcagggactgacgggcgagatgggagagaag
ggtcagaaaggtgacagctgcctcgcctgtgacacagaaggacttcaagggcctcctggg
ccacaggggcctccgggagagataggtttcccaggccagccgggtgccaaaggtgacaga
ggcttgcctggaagggatggtcttgaaggactgccggggccgcaaggtgcgcctggactg
atgggccagccaggagccaagggagagcccggcgagatttatttcgacatgcgactcaaa
ggcgataaaggagaccctggttttccgggacagcctggcatgccaggaagagcggggtcc
ccgggacgggacggccaccctgggcttccagggcccaagggctccccgggttcagtagga
ttgaagggagaacgtggtcctcctggaggagttggcttcccgggcagccggggtgacatc
ggcccgcctggacccccaggatttggccctattggccccattggtgacaaaggacaggca
ggatttcctggaagccctggatccccaggtttgccaggtcccaagggtgaagcaggaaag
gtcgttcctttgccgggtcctcctggagcagaaggacttccgggagccccgggattccca
ggccctcaaggtgaccgaggctttccaggaaccccaggccggcctggcctcccaggagag
aagggtgctgtgggccagccagggattggatttcctgggcctccaggtcccaaaggtgtc
gatggcttacctggagatgcaggaccccctgggagcccgggtcgccctgggtttaatggc
ttgcctggcagccccggcgtaccaggccagaagggcgagcctggaattggtctgcctgga
atcaaaggacagccgggtcttccaggcattcctggcacccccggagagaagggcagcatt
gggggaccaggcgttcccggagagcatgggctgataggcccccctggccttcagggggtc
agaggtgacccagggccacctggagtacaaggacctgcaggacccccaggcgcgccagga
gtcggcccccctggggctatgggcccacctggagggcagggaccccctggctcatcaggt
cctcctggagtcaaaggagagaagggttttcccggattcccgggactggacatgcctggt
cctaaaggagataaaggggctcagggtcttcctggcctgactggacagacagggctccct
ggcccccccggacagcaggggacacccggtgttccgggcttcccaggttccaagggagaa
atgggcgtcatggggacccccgggcagccaggctcaccgggacctgcaggtgtccccgga
ttacctggtgaaaaaggagaccacggcttccccggctcctcgggacccaggggagaccct
ggcttcaaaggcgataagggggatatcgggcttcctggaaaaccagggtccatggataaa
gtggatatgggcagcatgaagggagagaagggagaccaaggagagaaaggacaaattgga
cccactggcgataaaggctcccgaggagatccaggaaccccaggggtacctgggaaagat
gggcaggccgggcatcctggtcagccaggacctaaaggtgacccaggaataagcggtacc
ccaggggccccaggacttcctggtcccaaaggatcggtcggtggaatgggcttgcctgga
acacctggagagaagggtgtgcctggcatcccaggcccacagggcattcctggcatacct
ggagagaaaggagccaaaggggagaaagggcaggccggtctgcctggcatcggtcttccg
gggcggcctggcgataagggagacccagggctggcgggcttcccggggagccctggagag
aagggccagaagggcagcacaggaatcccaggaatgccggggtctcctggccccaagggg
ttgccagggagcattggctatccaggaagtcctggattgcccggtgagaaaggagacaaa
ggcctgccaggattagatggcatccctggtgtcaaaggagaagcaggtctccctgggact
cctggtcccacaggtccagctggccagaaaggagagcctggcagtgatggaatcccaggc
tctgcaggggagaagggtgagccaggtctacccggaagaggattcccaggtttcccgggg
gccaaaggagacaaaggttccaagggtgaagtgggcttccccggattagctggcagtcca
ggaattcctggatccaaaggagagcaaggattcatgggtcctcctgggcctcaaggacag
ccaggcttgcctgggacccctggccgccctgtggaggggcccaaaggagaccgcggacct
cagggacagccgggcctgccagggcttccgggacccatggggcctccagggctgcccggg
ctcgatgggctaaaaggtgacaaggggaacccaggctggccaggaacacccggtgccccc
gggcccaagggagacccaggcttccagggcatgccgggcatcggtggctctccgggaatc
acaggctcgaagggagatatgggtccaccaggagttccaggattccaaggtcagaaaggt
cttcccggcctccaaggactgaagggagaccagggagatcaaggcatacccggctccaaa
ggtcttcctggccccccgggcccccctggtccgtatgatgtcctcaagggagagccaggg
ctccccggtcctgaggggcccccaggcctgaaagggctccagggacccccaggccctaaa
gggcagcaaggtgtgaccggctcggcgggtgttcccgggccccctggcgcccctggcttc
gacggtgcccctggccagaaaggagagaccggacctttcgggcccccaggtcccagaggg
tttcccgggcccccagggcccgacgggctgccgggatccatggggcctccaggcacgcca
tctgtggaccatggcttcctcgtgaccagacacagtcagacaacagaagacccgtcctgt
cctcctggaaccaagattctttaccatgggtactcgctgctctacgtgcaaggcaatgag
cgggcccacgggcaggacctgggcacggctggcagctgcctgcgcaagttcagcaccatg
cccttcctgttctgtaacatcaataacgtgtgcaactttgcctcgcggaacgactactcc
tactggctgtccacccccgagcccatgcccatgtccatggcgcccatcactggggacggc
atccggccgttcatcagcaggtgtgcggtgtgtgaggcgccggccatggtgatggccgtg
cacagtcagaccatccagatcccaccgtgccccaacgggtggtcctcgctgtggatcggc
tattccttcgtgatgcacaccagtgctggtgctgaaggctctggccaagccttggcatcc
cccgggtcctgtctggaagagtttagaagcgcgccgttcatcgaatgccacggccgtggg
acctgcaattactacgccaacgcctacagcttttggctcgccaccattgagagaagtgag
atgttcaagaagcccacgccatccaccttgaaggccggggagctgcgaacccacgtcagc
cgctgccaagtgtgcatgaggagaacataa
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