Dipodomys merriami (Merriam's kangaroo rat): 138814042
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Entry
138814042 CDS
T11079
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
138814042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmer04121
]
138814042
Ubiquitin system [BR:
dmer04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
138814042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
LIM
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
138814042
NCBI-ProteinID:
XP_069858900
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MEEAEVDCSGAFAEAQRWVEAVTEKNFQTKDFRASLENGVLLCDLINKLKPGIIKKINRL
STPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTIKQEETDRRVKNVLITLYW
LGRKAQSNPCYHGPYLNLKAFENLLGQALTKALEDSSCLNRSGRDSGYSDFWCPDRGEFL
APPGRHKREDSFESLDSLGSRSLTSCSSDITLRGGRDGCESDTDSELTFRMQDYNKDDMS
YRRISAIEPKCALPFNRFLPNKSRQASYVPAPLRKKKPDKNEDNRRSWASPVYTEADGTF
SSHQRKTWGTKVEKWPTIRETSISSCYLEEEEERITSLPNIVKDDLYLRRLSPVMPNPGN
SFDQFLPKCWTPEDVSWKRIKRENYKPWYKEFQGFRRNSDSEEEESGSDRSSIIFNRIQK
AERRLDNRPRPSLLLELATKWALKSRDTHAAGRTRAASSEHSQFLLLQALQTYSDDILSS
ETNVRIDPTSGPRLITRRKNLPHAPGFRRDDLEMPALDPDLENDDFFVRKTGAFHANPCV
LRAFEDFRRFSEQDDSVERDIILQCREGDLVFPDLEKDDMIVRRIPAQKKEVPLSGAPDR
YQPVPFPEPWTLPPEIQAKFLCVLERTRPPKEKSTSCRILVPSFRQKKDDMLTRKIQSWT
LGTSVPPISFTPGPCSEADLQKWEAIREASQLRHKKRLMVERLFQKIYGENGSKSMSDVS
AEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKSRRKNYTSDLQKKKEEREEIEKQ
ALEKADRSSKTFREMLQDRESRNQKSTVTSSGRLYSSDDISNDEELSSSLTLSETSYQHQ
RAEEEGTTSPTEFPKEASTRFLNMQDSVAAETGLPSNPPAEEQRSASLSSQHSPSTRMEV
TRVSASASLPRSYQKTDTARLTSVVTPRPFGTQARGISSLPRSYTMDDGWKYNGDVEGAK
KTQHNLASTPAPKPDTSQLVSSMSSEMEAATGEGVTGRLTSPMSPFSSLSQEEAAAPKTT
LSSMSGPDLLSDSAEERSLLQREVSKSQDQFSDMRININQTPGNSLDFGFTVKWDYSGIF
VASVEPGGPAEISQLQVDDEIIALNNTKFSYNDTKEWEEAMANARETGNLVMDIRRYGKS
GSPETKWIDTTSGIYNSDKSLSLSTTTDFSESLQSPYTESKEINGIHDESNTFESKASEP
ISLKNLKRRSQFFEQGSSDSVVPDLPVPSLSAPSRWAWDQEEERKRQERWQKEQDRLLQE
KYQREQEKLREEWQRAKQEAERENSKYLDEELMVLNSNNVSLTTRQPTLSSWEATWSEGS
KSSDREGSRAGEQERSPQEEEVVHEEPRQKLQDQLILEQERKLKEQQQMQEEQEEAIEAQ
KHQAERERETSVKIYQYRRPVDSYDIPKREEESSDLLPSDRSKSRSTTELDDYSTSKNGS
SKYLDQIGSVSFSQRSSKKDPVPSGAERERQQILQEMRKRTSLHDDNSWIRQRSASVNKE
PICLPGMMRRGESLDNLDSPRSGSWRQSPWHSQPAGVYASSSVQDFSRPPPQLLSTSNRA
YMRNPSSSVPPPAGQVKNTITSMVTSRSPVPRSHSPSTLQSGSQLRNRSVSGKRTCSYCN
NILGKGAAMIIESLGLCYHLHCFKCVSCGCDLGGSSSGAEVRIRNHQLYCNDCYLRFKSG
RPTAM
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggcagaggtcgactgctccggggcgttcgccgaggctcagagatgggtggag
gcagtaacagagaagaattttcaaacaaaggattttcgagcttccctagaaaatggtgtc
ctgttgtgtgatttgattaataagcttaaacctggcatcattaagaagatcaatagactg
tccacaccaatagcgggtttggataatataaacgtttttttgaaagcttgtgaacagatt
ggtctgaaagaagctcagcttttccacccgggggatctacaggatttatcaaatcgagtc
accatcaagcaagaagagactgataggagagtgaaaaatgttttgataaccttgtactgg
ctgggaagaaaagcacaaagtaatccctgctatcatggtccctatcttaatttgaaagca
tttgagaatcttttaggacaagctttgactaaggcacttgaagactccagctgcctgaac
agaagtggtcgtgacagtggctatagtgatttctggtgtcctgaccgaggagaatttctg
gctcctccaggtagacataagagggaagattcctttgagagtttggactccttgggctcc
aggtcgttgaccagctgctcctcagatatcacactgagagggggacgggacggttgtgaa
agtgacacagattcagaattgacattcagaatgcaggactataacaaagatgacatgtcc
tatcgaaggatttcggctattgaaccaaagtgtgctttaccattcaatcggtttttaccc
aacaaaagtagacaggcatcctatgtcccggcacccttgaggaagaagaagccagacaaa
aatgaggataaccgaaggagctgggcaagcccggtctatacagaagcagatggaacattc
tcaagtcaccagaggaaaacttggggcaccaaggtggagaaatggccaacaatccgagag
acatcaatctcctcttgttatttggaagaggaagaagaaaggatcacaagtctacccaac
attgtcaaggatgatctgtatctgcgaaggctaagtccagtcatgccaaacccagggaat
tcttttgatcagtttcttcctaaatgttggaccccagaagatgtgagctggaaaagaata
aaaagggagaattataaaccatggtataaagaatttcagggattcagaagaaattcagac
tcagaggaagaggaatcaggctctgacagaagctccatcatttttaatagaatacagaaa
gcagagcgtaggttagacaaccgcccaagaccgtcactcttgctggaactagccaccaaa
tgggccttaaagtcacgggatacccacgcagccggcaggaccagggctgcctcatctgag
cacagtcagtttttattacttcaggctctccaaacatactctgatgacatcttgtcttct
gaaacaaatgtcagaattgatcccacttctggcccaaggctcatcacacgcagaaagaac
cttcctcacgcaccaggctttagaagagatgaccttgagatgccagccttggaccctgat
ttagaaaatgatgatttctttgtcagaaaaacaggggctttccatgcaaatccctgtgtt
ctccgagcttttgaagacttcagaaggttctctgagcaagatgattctgtagagcgagat
ataattttgcaatgtagagagggtgacctcgtatttccagatttagaaaaagatgatatg
attgttcgccgaattccagcacagaagaaagaagtgcctctgtctggggcccccgataga
taccagccagtcccttttcctgaaccctggactctgcctccggaaattcaagcaaaattt
ctctgtgttctggaaaggacacgcccacccaaagaaaagagtaccagctgtagaatatta
gttccgtcctttcggcagaagaaggatgacatgctgactcgcaagattcagtcttggaca
ctggggacttctgttcctcccatcagttttacccctggtccctgcagtgaggctgacttg
cagaagtgggaggctatccgggaggccagtcaacttaggcacaagaaacgactgatggtt
gagagactctttcaaaaaatttatggtgagaacgggagtaagtccatgagcgatgtcagt
gcagaggatgttcaaaatctgcgtcagctgcggtatgaggagatgcagaaaataaaatcc
cagttaaaagaacaagatcagaaatggcaggatgaccttgcaaaatggaaaagtcgccgg
aaaaattatacttcggatctgcagaagaaaaaggaagagagggaagaaattgaaaagcag
gcacttgagaaggcagacagaagctctaagacatttagagagatgctacaggacagggaa
tcccgaaatcaaaagtctacagttacatctagtgggagattgtattcttctgatgatata
tcaaatgatgaagagctctcttcttcactgactctgtcagaaaccagttaccagcaccag
agagcagaagaggagggaacaacttctcctactgagtttcctaaagaagcctctacacgt
ttcctgaacatgcaggacagtgtagctgccgaaacggggcttccttctaacccccccgca
gaagaacagcgctcagcttctttgtcttctcagcattcaccgagtacacgaatggaggtg
actcgagtttcagcttcagcctctctccccagaagctaccagaaaactgatacagccagg
ttaacatctgtggtcacaccgagaccttttggcactcaggcaaggggaatctcatcactc
cccagatcctacacgatggatgatggttggaagtataatggggatgtagaaggagctaag
aaaactcagcacaatttggccagcacccctgccccaaagcctgacaccagccagcttgtt
tccagcatgtccagtgaaatggaggcagccacaggagaaggtgtgacggggaggctgact
tctcccatgtctcctttctcatctctctcccaagaggaggctgctgctcctaaaaccaca
ctctcctccatgtctggccccgatttactgtctgactctgctgaagagagaagcttacta
cagagagaggtctcaaagtctcaggatcagttcagcgatatgagaatcaacataaaccag
actcctgggaacagtcttgacttcgggtttacagtaaaatgggattattccgggatcttc
gtagcatcagttgaaccaggtggccccgcagagatttcccagctgcaggtagatgatgaa
attattgctctcaacaacaccaagttttcatacaacgatacaaaagagtgggaggaagcc
atggcaaatgctcgggaaactggaaacctagtgatggatatcagacgctatggaaagtct
ggttcacccgaaacaaagtggattgatacaacttctggaatttataactcggacaagtct
ttaagtctatccacgacaactgatttctctgaaagccttcagagtccttatactgaatca
aaagaaatcaatggaattcacgatgaaagcaacacttttgaatcaaaagcatctgaacct
atttctttgaaaaacttaaaaaggcggtcacaattttttgaacaaggaagctctgattct
gtggttcctgatcttcccgttccaagcctcagtgccccaagtcgctgggcatgggatcaa
gaggaggagcgaaagcggcaggagagatggcagaaagagcaagaccgcctgctgcaggaa
aaataccaacgtgagcaggagaaactgagggaagagtggcaaagagctaaacaggaagcc
gaaagagagaactctaagtatttggatgaggaactgatggtcctgaactcaaacaacgtt
tctctgaccacacgacagcctactctttccagctgggaagccacatggagtgaaggctct
aagtcctccgacagggaaggaagccgagcaggagagcaggagaggagtcctcaggaagag
gaagtggttcatgaggagccaagacagaagcttcaggaccaactcattctggagcaagag
aggaaactgaaggagcagcaacagatgcaggaagagcaggaggaggccatcgaggcacag
aaacaccaggcagagagagagagggagacttcagtcaaaatataccagtacaggagacct
gttgattcctatgacataccgaagagagaagaagaatcttcagatttgcttcctagtgac
aggagtaaatcccgatcaactactgaactagatgattactctacaagcaaaaatggaagc
agcaaatatttagaccaaattgggagtgttagcttttcacagaggagctccaagaaggat
ccagtcccctcaggggcagagcgggagagacagcaaatcctccaggaaatgaggaagaga
acttccctccacgatgacaacagctggatccggcagcgcagtgccagtgtgaataaagag
ccgatttgtctgcctgggatgatgagaagaggcgagtctctagataacctggactccccc
aggtccggttcttggaggcagtccccgtggcacagtcagcccgcaggtgtctacgcctcc
tcctctgttcaggacttcagccgcccaccgcctcagctgctgtccacatcaaaccgtgcc
tacatgcggaacccttcatccagcgtaccccctccagctggccaggtgaagaacaccatc
acgagcatggtgacctcacggtcccccgtcccacgcagccattccccctccactttgcag
tcggggtctcagcttcgcaacaggtcagtgagtgggaagcgcacgtgctcctactgtaat
aacattctgggcaaaggagccgccatgatcatcgaatccctggggctttgttaccattta
cattgctttaagtgcgtgtcctgcgggtgtgatctcggaggctcatcgtcaggagctgaa
gtcagaatcagaaaccaccaattgtactgcaacgactgctatctcagattcaaatccgga
cggccaactgccatgtga
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integrated database retrieval system
