Dipodomys merriami (Merriam's kangaroo rat): 138814535
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Entry
138814535 CDS
T11079
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04612
Antigen processing and presentation
dmer05145
Toxoplasmosis
dmer05152
Tuberculosis
dmer05164
Influenza A
dmer05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
138814535 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
138814535 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
138814535 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
138814535 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
138814535 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
dmer01001
]
138814535 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dmer04054
]
138814535 (Ciita)
Enzymes [BR:
dmer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
138814535 (Ciita)
Protein kinases [BR:
dmer01001
]
Serine/threonine kinases: Other
TAF1 family
138814535 (Ciita)
Pattern recognition receptors [BR:
dmer04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
138814535 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
AAA_16
LRR_14
AAA_22
Motif
Other DBs
NCBI-GeneID:
138814535
NCBI-ProteinID:
XP_069859578
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MHSPLLPWTSDILGESLQTGRGTASSLASQTMRCLAPCPLGPHLPEPQGSGQPGTMEVGL
PEGGYLELLNSDTDPLCLYHICDQMDLAGEEIELCSEADPETINCDQFTRLLCDVEEDEE
AGEAYANIAELDQYVFQDSQMEGLSKDIFIEHIGLDEGTCESVEVPAEAGKRNQKRSLPE
EQPLDPKRRKPAETPAVPILTGSFLVGPVGSNSPLLCPSPALFSQEPVPGQAHLEGAVQL
TALPSGSSMNCLHLSAGPFQFISTLPALPQGCWQISEAGTNISGIFIYHGDIPQASQVFP
CTGPPVQSLPKSPDRPGSTSPFAPSTADLPSMPEAALTSRADVTEDDMSPSPHQGAAEVS
VSLPKWPGPVEQFCRSLRDRYRAEPAGLDGLLVDVDLVRARLEKGSNKSQERELATLDWA
ERQPARGGLAEVLLSTSDRRQPRETHVIAVLGKAGVGKSHWARAVSRAWACGQLPQYDFV
FHVPCHCLDRPGTTYRLQDLLCPAGLHAQALDDRVLSHIVRRSNHVLLILDGFEELEAQD
GSCGPVCSEPCSFRGLLAGLFQGKLLRGCTLVLTARPRGRLAQCLSKADALFEVPGFSTE
QALTYLRRYFEDTGATEDQERALALLREQPFLSSHGHNPAVCQAVCQLSKVLLRAGAEAQ
LPCTLTELYVGLVGPAARDSPPGALASLAELAWELGRRHQSTLREDQFPSAEVRTWAVAR
GLVRAAPGAVEAGLAFASFPLHCFLGALWLAQSSDIKDKKLPQYLALTPRKKRPYDNWLA
GAPRFLVGLLFQPRARCLGALLGPAAAAAGADRKRKVLTRYLKRLQPGKLQAARVLELLH
CAHEAQDPGIWQHVLQGLPENLSFLGTRLTPPDAHLLGRALESAGRDFSLDLRSTGLDPT
GLGSLVGLSCVTRFRAALSDTTGLWESLRRRGETPLLCAAEEKFTIEPFKAKSLKDVEDL
GHLVQTPRVALCSDDPARDLPAVRDLKKLEFALGPVLGAQAFPKLARILPAFSSLQHLDL
DSLSENKIGDEGVAQLSATFPWLKALETLNLSQNSITDVGACQLADALPALAATLLRLSL
YNNCICDKGAESLARVLPDMESLRVMDVQYNKFTAVGAQQLAASLRKCPHLHTLAMWTPT
IPFGVQEHLQQLDSRISLR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcactccccgctgctgccctggacttcagacatccttggggagagcctgcagacaggg
aggggcaccgcttcctccctcgcgtctcagaccatgcgctgcctggctccatgccctctg
gggccccacctgcctgaaccccaaggcagtgggcagccaggcaccatggaggtgggcctg
ccagagggcgggtacctggagcttctcaacagtgacacagaccccttatgcctttaccac
atctgtgaccagatggacttagctggagaagagatcgagctgtgctcagaagccgatccg
gaaaccatcaactgcgaccagttcactaggctgctgtgtgatgtagaagaggatgaagag
gctggggaggcttacgccaacattgcggaactggaccagtatgtgttccaggactcccag
atggaaggcctgagcaaggacattttcatagagcacattggactagacgaggggacatgt
gagagcgtagaggtgccggccgaagcgggaaagcgaaatcagaaaagatccctcccggag
gagcagcccctggacccgaagcgcaggaagccagctgagacacctgctgtgcccatcctg
actggcagtttcctggtagggccagtaggtagcaactctcccctgctctgcccatcacct
gctctgttcagccaggaaccagtaccaggccaggcgcacctggagggagctgtccaactg
acagcgctcccctctggatcctccatgaactgcctccatctttctgccggacctttccag
ttcatctcaactctccctgccctgccccaggggtgctggcaaatttcagaggctggcaca
aacatctccgggatatttatctatcatggtgacataccccaggccagccaggtatttcct
tgcactggtcctcctgttcagagcctcccaaagtccccagaccggccgggctccaccagc
ccctttgctccatccacggctgacctgcccagcatgcccgaagcagcgctgacctcccgt
gcagatgtgacagaggatgacatgtcgccctccccacaccaaggggctgcagaggtctct
gtcagtctcccaaaatggcctgggcctgtggagcagttctgccgctctctccgggacagg
taccgggctgagcctgcgggcctggatggcctcctggtggacgtggacctggtgcgggcc
aggctggagaagggcagcaacaagagccaggagagggagctggctaccctggactgggca
gagcgacagccggcccgcgggggtctggccgaggtgctgctgtccaccagtgaccgccga
cagccgcgagaaacacacgtgattgccgtgctgggcaaagccggcgtggggaagagccac
tgggcccgggcagtgagcagggcctgggcgtgcggccagctcccccagtacgacttcgtc
ttccacgtcccctgccattgcctggaccgtccggggaccacctaccgcctgcaggatctg
ctctgccccgcgggcctgcacgcgcaagccctggacgacagggtcctcagccatattgtg
aggaggtccaaccatgtcctgctcatcctggatggcttcgaggagctcgaagcgcaggac
ggctcgtgtggacccgtgtgctccgagccctgctccttccgcgggctgctggccggcctg
ttccaggggaagctgctgcgaggctgcacgctggtcctcacggcccggccccggggccgc
ctggcgcagtgcctgagcaaggccgacgccctgttcgaggtgcccggcttctccaccgag
caggctctgacttacctacggcgctactttgaggacacgggggcgaccgaggaccaggag
agggccctggcgctcttgagggagcagccatttctctccagccacgggcacaaccccgcc
gtgtgccaagccgtgtgccagctctccaaagtgctgctgcgggcgggcgccgaggcccag
ctgccctgcacgctcacggaactctacgtgggcctggtgggccccgccgccagggacagc
cccccgggggccctggccagcctggccgagctggcctgggagctgggccgcaggcaccag
agcaccctgcgggaagaccagttcccctcggccgaggtgaggacgtgggccgtggcccgg
ggcttggtgcgggccgccccgggcgctgtggaggccgggctggcctttgccagcttcccg
ctgcactgcttcctgggggccctgtggctggcccagagcagcgacatcaaggacaagaag
ctgccgcagtacctggcactgacacccaggaagaagagaccctatgacaactggctggcc
ggcgccccgcgcttcctcgttggcctcctcttccagcctcgcgcccgctgcctgggagcc
ctgctggggcccgccgccgctgccgccggggcagacaggaagcggaaggtgctcacgagg
tacctgaagcggctccagcccgggaagctgcaggcggcgcgggtgctggagctgctgcac
tgcgcccacgaggcacaggaccccgggatctggcagcatgtgctgcaggggctccctgaa
aacctctccttcctgggcacccggctcacgccccccgatgcccacctgctgggcagggcc
ttggagtccgcaggccgagacttctccctggacctccgcagcactggccttgaccccacg
ggcctgggcagcctcgtgggactctcctgtgtcacgcggttcagggccgccttgagtgat
accaccgggctgtgggagtcgctgcggcggcgtggggagaccccgctactctgtgcggcg
gaggagaaattcaccatcgagcccttcaaggccaagtccctgaaggacgtcgaggacctg
ggccacctggtgcagaccccgagggtggcactttgctccgacgacccggccagggacctg
cctgccgtccgagacttgaagaagctggagtttgcattgggccccgtcctgggtgcccag
gccttcccgaagctggcgaggatccttcccgccttctcttcccttcagcatctggacctg
gactccctgagcgagaacaagatcggggacgagggcgtggcgcagctctcggccaccttc
ccctggctgaaggcgctggagacgctcaacctctcccagaacagcatcaccgacgtgggc
gcctgccagctggcggacgccctacccgcccttgccgccaccctcctgaggctcagcttg
tacaataactgcatctgtgacaaaggtgccgagagcctggcacgcgtgctccccgacatg
gagtccctgcgggtgatggatgtccagtacaacaagttcacggctgtgggtgcccagcag
ctggccgccagcctgaggaagtgcccccacctgcacacgctggccatgtggacacctacc
attccctttggcgtccaggaacatttgcagcaactggactcgcggatcagcctgagatga
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