KEGG   Dipodomys merriami (Merriam's kangaroo rat): 138814609
Entry
138814609         CDS       T11079                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
dmer  Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03013  Nucleocytoplasmic transport
dmer03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138814609
  09122 Translation
   03013 Nucleocytoplasmic transport
    138814609
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmer03019]
    138814609
   03041 Spliceosome [BR:dmer03041]
    138814609
Messenger RNA biogenesis [BR:dmer03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     138814609
Spliceosome [BR:dmer03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    138814609
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_EML Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta NBCH_WD40 Beta-prop_IP5PC_F EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WDR54 WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 138814609
NCBI-ProteinID: XP_069859757
LinkDB
Position
Unknown
AA seq 341 aa
MERASLLAAPLGQTEVFQALQRLHMTIFSQSISPCGKFLAAGNNYGQIAIFSLSAALSSE
AKEESKKPVVTFQAHDGPVYSMVSTERHLLSAGDGEVKAWLWAEILKKGCKELWRRQPPY
RTSLEVPEINALLLIPKENSLILAGGDCLLHTMDLETGAFTRALRGHTDYIHCLALRERS
PEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA
LTLWHLRSSTPTTIFPMRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGL
LSLSLNQQPAAPECKVLTAAGNSCRVDVFTNLGYRAFSLTF
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggagcgcgcttcgctgctcgcggctcctctgggtcagacagaggtgtttcaggccctg
cagcggctgcacatgaccatcttctctcagagcatctcgccctgtgggaagttcctggca
gctggcaacaattatgggcagatcgccatcttcagcttgtctgctgctttgagttcagag
gccaaagaggaaagcaaaaagcctgtggtgaccttccaagcccatgatgggcccgtctac
agcatggtctccactgaaagacatctgctcagtgctggggatggagaggtgaaggcatgg
ctttgggcagagatcctcaagaagggctgtaaagagctgtggcgtcgccagcccccgtac
aggaccagcctggaagtgccggagatcaatgccttgctgctcatccccaaggagaactcc
ctcattctggctgggggagattgtctgctgcacaccatggaccttgaaacgggggccttc
acgcgggccctgcggggccacaccgactatatccattgcctggcactgcgggaacggagc
cccgaggtgctgtcagggggcgaggatggggctgtgcgtctttgggacctccgcacagcc
aaagaggtgcagaccatcgaggtctacaagcatgaggagtgctcaagaccccacaacggg
cgctggattggatgcctggcgactgattcagactggatggtctgtggagggggtccagcc
ctcactctctggcacctccgatcttccacacctaccaccatcttccccatgcgggcacca
cagaaacacgtcaccttctaccaggacctgattctctccgctggccagggccgttgtgtc
aaccagtggcaactgagtggagagcttaaggcccaggtgcctggctcctccccggggctt
ctcagcctcagcctcaaccaacagccggcagcacccgagtgcaaggtcctgactgctgcg
ggcaacagctgccgggtggatgtcttcaccaacctgggctaccgagccttctccctgact
ttctga

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