KEGG   Dipodomys merriami (Merriam's kangaroo rat): 138814626
Entry
138814626         CDS       T11079                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dmer  Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03030  DNA replication
dmer03410  Base excision repair
dmer03420  Nucleotide excision repair
dmer03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dmer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    138814626
   03410 Base excision repair
    138814626
   03420 Nucleotide excision repair
    138814626
   03430 Mismatch repair
    138814626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dmer03032]
    138814626
   03400 DNA repair and recombination proteins [BR:dmer03400]
    138814626
Enzymes [BR:dmer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     138814626
    6.5.1.6  DNA ligase (ATP or NAD+)
     138814626
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     138814626
DNA replication proteins [BR:dmer03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    138814626
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     138814626
DNA repair and recombination proteins [BR:dmer03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     138814626
   NER (nucleotide excision repair)
    Other NER factors
     138814626
   MMR (mismatch excision repair)
    Other MMR factors
     138814626
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PucR DDR
Other DBs
NCBI-GeneID: 138814626
NCBI-ProteinID: XP_069859811
LinkDB
Position
Unknown
AA seq 979 aa
MQRTIRSFFQPANEGKVKKPEKEATTKGSRETEAPAPPKAALKEQNGVVSPSDSPVKRPA
KKAARVLSSEGEEEDEALDTHKGQKPVPASPKSSPSSSGTSPENSPSGPDTSPMDTSPSG
FPKRRTARKQLPKRTIQDVLEDQSEEDKDREAKKRKEGDEAETPRDSPTETNVVKPKGEE
EEDQPATPPKSPKARTPTKTESSPAPRAAGKRKRPEEEKQQQEEKQPGEEKQPREEKQQQ
EEKQPGEKKQQQEEKQPEEEKQQREKKQPGEEKQRQEEPSKPLPKAPRTLSSFFTPRKPV
VKAEVKGEELGAAKKAAKGPLDPMSYNPGKNNYHPIEDACWNPGQKVPFLAVARTFEKIE
EVSARLRMVETLSNFLRSVVALSPPDLLPVLYLSLSRLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESIRAEAAEKGDVGLVAESSRSTQRLMLHPPPLSAAGVFNKFRDIASLTGSAST
AKKIDIIKGLFVACRHSEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPAV
VDAGKGRTAEARKTWLEEQALVLKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLSPGVPL
KPMLAHPTRGVAEVLKRFDEAAFTCEYKYDGQRAQIHFEEGGEVKIFSRNQEDNTGRYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVEASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRDNFVEMEGEFVFATSLDTKDTEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
AAYDEDSEELQAICKLGTGFSDEELDTHYQSLRELVLPTPRPYVRADGAVAPDHWLDPRA
VWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKEPEQATTSTQVAALYRKQ
SQIQNQLGTDSDSDPEGFY
NT seq 2940 nt   +upstreamnt  +downstreamnt
atgcaacgaactatcaggtcatttttccaacctgccaatgaaggtaaagtgaagaagcct
gaaaaagaggctacaaccaaaggcagcagagagacggaggcccctgcacctcccaaggcg
gcgctgaaggagcagaatggagtggtatctccaagtgactctccagtgaagaggccagcg
aagaaggcagcccgggttctgagcagtgaaggggaggaggaagatgaagccctcgatacc
cacaaaggccagaagcctgtgccagcctccccaaagtcctcaccttccagctctggcaca
agtcccgagaacagcccttctggcccagatacctcccccatggacacttccccatccgga
ttcccaaagcggcgcacagctcggaagcagctcccaaagcggacgatccaggatgttctg
gaagatcagagtgaggaggacaaggacagagaagccaagaagaggaaggagggagacgaa
gcagagaccccaagagacagccccacagagaccaatgtggtaaaaccaaaaggagaagag
gaagaggaccagcccgcgacacccccgaagtcccccaaagcccggactccaaccaagaca
gaaagcagccctgcgcccagggcggcgggcaagcggaagcggccggaagaggagaagcag
cagcaggaagagaagcagccaggggaggagaagcagccaagagaggagaagcagcaacag
gaggagaagcagccaggggagaagaagcagcagcaggaagagaagcagccagaggaggag
aagcagcagcgggaaaagaagcagccaggggaggagaagcagcggcaggaggagccaagc
aagccccttcccaaagccccccgcacgctcagcagcttcttcaccccccggaagcccgtg
gtcaaggcggaagtaaaaggagaggagttgggtgctgcgaagaaagcggccaagggaccc
ctggacccgatgagctacaatcctggcaagaacaactaccaccccatcgaggacgcctgc
tggaaccctggccagaaggtccctttcctggctgtggcgcggacatttgagaagatcgag
gaggtgtccgctcggctccgcatggtggagacactgagcaacttcctgcgctccgtggtg
gccctgtcaccgccagacctgctcccggtcctctacctcagcctcagccgcctggggcct
ccgcagcagggcctggagctgggcgtcggcgacggcgtcctcctcaaggccgtggcccag
gccacaggccggcagctggagtccatccgtgccgaggcggccgagaagggcgacgtgggg
ctggtggccgagagcagccgcagcacgcagcggctcatgctgcatccgccgccgctctcc
gccgccggcgtcttcaacaagttccgtgacatcgccagcctcaccggcagtgcttccact
gccaagaagatagacatcatcaaaggtctcttcgttgcctgccgccactcggaagcccgg
tacatcgccaggtccctgagtggacggctgcgccttgggctggcggagcaatcggtgctg
gctgccctcgcccaggccgtgagcctcacgcccccaggccaaggattccccccagctgtg
gtggatgctgggaagggcaggacggcggaggcccggaagacatggctggaggagcaggcc
ctggtcctgaagcagacgttctgcgaggtgcccgacctggaccgcattgtgcccgtgcta
ctggaacatggcctggagcggctcccggagcactgcaagctgagtccaggggtcccgctg
aaacccatgctggcccaccccactcgaggtgtcgccgaggtcctgaaacgcttcgacgag
gcggccttcacctgcgagtacaaatatgacggacagagggcgcagatccacttcgaggaa
ggcggggaggtgaagatcttcagcaggaaccaggaggacaacacggggaggtaccccgac
atcatcagccgcatccccaagattaaactcccttcggtcacgtctttcatcctggacacc
gaggcggtggcttgggaccgggaaaagaagcagatccagccattccaggtgctcactacc
cgcaaacgcaaggaggtggaagcgtcagagattcaggtgcaggtgtgcttgtacgccttc
gacctcatctatcttaatggcgagtccctggtccgggagccgctgtcccggcgccggcag
ttgctccgagacaacttcgtggaaatggagggcgagttcgtcttcgccacctccttagac
accaaggacacagagcagattgctgagttcctggagcagtcagtgaaagactcgtgcgag
ggactcatggtgaagacgctggatgtggatgccacctatgagatcgccaagcgttcgcac
aactggctcaagctgaagaaggactacctggatggtgtgggggacaccctggacctcgtg
gtgattggtgcctacttgggccgggggaagcgggccggccgctatgggggcttcctgctg
gccgcctacgacgaggacagcgaggaactgcaggccatatgcaagcttgggaccggcttc
agcgacgaggagctagatacacactaccagagcctccgggagctggtgctgcccaccccg
cgcccctatgtgcgcgccgacggcgctgtggcccctgatcactggctggacccccgcgcc
gtgtgggaggtgaagtgtgcggacctctccctctcccccatctaccccgccgcccgaggc
ctggtggatagcgagaagggcatctccctgcgcttccctcgcttcgtccgtgtccgcgaa
gacaaggagcctgagcaggccaccaccagcacccaggtggccgccctgtaccgaaagcag
agtcagatccagaaccagctaggcaccgactcggactctgatcctgagggtttctactga

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