Dipodomys merriami (Merriam's kangaroo rat): 138815393
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Entry
138815393 CDS
T11079
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138815393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138815393
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138815393
mRNA degradation factors
5'-3' decay
Decapping complex
138815393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
DUF445
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
138815393
NCBI-ProteinID:
XP_069860860
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGTSAESQRPPSTYNGDLNGLLVPEPLSSGDRTS
TNKPGLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGASLNQFRRIIWCPF
IPEESEDCCEESSPMVALLHEDRAEVWDLEMLRSSHNTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAENSHGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFGESRPELSNEGLGSAAHGSQSDLRRIVELPAPADFLSLSNETKPKLMTPDAFMT
PTASLQQITASPGSSSNSSSSSSSSLTAVSAVSSTSAVDPSLSSLPASRPPEELTLSPKL
QLDSSLTMSSSSSLQTSPRSLLPGLLPGPADKLTPKGPGQVSTAASALSVELQEVEPLGL
PQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAAEGLEPDSMASAASALHLL
SPRPRAGPELGSQLGLEGGPGDGDRHSTPSLLEAALTQEAAAPDSQVWPTAPDITRETCS
TLAESPRNGLQEKHKSLAFHRLPYHLLQQHDSQDTSAEQSDHDDEVASLASASGGFSAKI
PTPRLPAKDWKTKGSPRSSPKLKRKSKKDDGDSAVGSRLTEHHVVEPPEDWPALIWQQQR
ELAELRHSQEELLQRLCAQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQRGGQL
QEQLTQQMSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEG
SMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIND
SFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMVATVSSSVRAE
VQHQLHLAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHL
DCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLL
SLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHN
SLGKAARRLSLMLHGLVTPSLP
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcatctgcgggacatcctc
aagctggaccggccggcagggggcaccagtgcagaaagccagaggccacctagtacctac
aatggggacctcaatgggctcctggttccagagcccctcagctcaggtgatcgtacgtca
acaaacaagcctggtttgcggaccatgccacccattaacctgcaggagaagcaggtcatc
tgcctctctggagatgacagctccacctgcattggaattttggccaaggaggtagagatt
gtggccagcagtgactctagcatttcaagcaaggcacgggggagcaacaaggtgaaaatt
cagcctgtagctaaatatgactgggaacagaagtactactatggcaacctgattgctgta
tctaactccttcttggcatatgctattcgggctgccaacaatggttcagcgatggtgcga
gtgatcagtgtcagcacttcagagcggaccctgctcaagggtttcacaggcagtgtggct
gatctggcctttgcacacctcaactctcctcagctggcctgtctagatgaggcgggcaac
ctgtttgtatggcgcttagctctagttaatggcaaaattcaagaagagatcttagtccat
atccgacagccagagggtgcatcactaaaccaattccgtaggatcatctggtgccctttc
atccctgaggagagcgaggactgttgtgaggagagcagcccaatggtggcccttctgcat
gaagaccgggctgaggtatgggacctggaaatgctccgttctagccacaacacctggcct
gtggatgtcagccaaatcaagcaaggcttcattgtggtaaaaggccacagcacgtgccta
agtgaaggagccctctcccctgacgggactgtcctggctactgcaagtcatgatggatac
gtcaagttctggcagatttacattgaagggcaagatgagccaaggtgtctccatgagtgg
aaacctcatgatggacggcccctctcctgtctcctgttctgtgataaccataagaaacag
gaccctgaagtcccattctggaggttcctcattactggtgctgaccagaatcgggagctg
aagatgtggtgcacagtgtcctggacctgtctgcagaccattcgtttctccccagatatc
ttcagttcagtgagtgtgccccccagccttaaggtttgcttggatctctcagcagagtac
cttattctcagtgatgtacaacggaaggttctctatgtgatggagctgctacagaaccag
gaggagggccgggcctgcttcagctccatctcggagttcctactcacccaccctgtgctg
agctttggcatccaggttgtgagtcgctgccgacttcgacacactgaggtactgcctgct
gaggaagaaaatgacagcctaggagctgagaattcccatggagccggtgccgtggagtct
gcagctggtgtgctcatcaagcttttttgtgtacacactaaggcactgcaggatgtgcag
atccgcttccagccacagctaaaccctgatgttgtggccccactccccacccacactgcc
catgaagactttacttttggagaatctcgacccgaactaagcaatgagggcctagggtca
gctgctcatggatctcagtctgacctccgacgcatagtggagctgcctgcacctgctgat
ttcctcagcctgagcaatgagaccaagcctaagttgatgacacctgatgccttcatgaca
cctactgcctccctgcagcagatcactgcatctcctggcagcagtagcaacagcagtagt
agcagcagcagctctctaacagctgtgtctgcggtgagcagcacctcagctgtggacccc
tcattgtccagtcttcctgccagcaggccacctgaggagctgaccttgagccccaagcta
cagctggatagcagtttgacaatgagcagcagcagcagcctgcagacaagccctcgaagc
ctcctgcctggcctgctcccaggcccagctgacaaactgactcccaaggggcctgggcag
gtatctactgctgcctctgcactgtccgtggagctgcaggaagtggagcctctagggcta
ccccaggcctcccccagtcgcacccgctcccctgatgttatctcctcggcttctactgcc
ctatcccaggacattcctgagattgcatctgaggccctgtcccgtggctttggctcctct
gctgccgagggccttgagcccgacagtatggcctcagctgcctcggcactacacctactg
tctccacggccccgagcagggccagagcttggttcccagcttggcctagaaggaggccct
ggggacggggatcgacatagtaccccttctctactggaggcagccttgacccaggaagct
gcggcccctgatagtcaggtctggcccacagcacctgacatcactcgtgagacctgtagc
acactggcagagagccctaggaatggtctccaggaaaagcacaaaagcctagctttccac
cgactaccttatcacctgctgcagcaacatgacagccaggacaccagtgctgaacaaagt
gaccatgatgatgaggtggccagtcttgcctctgcttctggaggcttcagcgccaaaatt
cccactccacggctgcctgccaaggactggaaaaccaaaggatcccctcggagctcaccc
aagctcaagaggaaaagcaagaaggatgacggggattcagctgtgggatcccggctcacg
gagcaccatgtggtagagcctcctgaggactggccagcactaatttggcagcaacagaga
gagctggcagagctgcgacatagccaagaagagctgctgcagcgtctttgtgcccagctt
gaaggtctgcagagtactgtcacaggccatgtagaacgtgcccttgagacccggcatgag
caggaacagcggcgactagagcgggcactggctgagggacagcagcgaggtgggcagctt
caggagcagctgactcagcagatgtctcaagcactgtcctcagctgtggctgggcggctg
gagcgcagtatacgggatgagatcaagaagacagtgcctccgtgtgtctctaggagtctg
gagcctgtggcaggacaactgagcaactcagtcgctactaagctcacagctgtggagggc
agcatgaaagagaatatctccaagttactcaagtctaagaacttgacagatgccattgcc
cgagcagctgcagatacattacaggggccaatgcaagctgcttaccgtgaagccttccag
agtgtagtactgcctgccttcgagaagagctgccaggccatgttccagcagatcaatgat
agctttcggctgggcacacaggaatatttgcagcaactagaaagccacatgaagagtcgg
aaggcacgggaacaggaggccagggagcctgtgctggcccaacttcggggcctggtcagt
acactgcagagtgccaccgagcagatggtggccactgtgtccagcagtgttcgggctgag
gtgcagcaccaacttcatttggctgtgggcagtctacaggagtcaattttagcacaagta
caacgcattgttaagggtgaggtgagcgtggcactcaaagagcagcaggcaaccgtcacc
tccagcatcatgcaggccatgcgctcagctgctggtacacctgtcccctctgcccacctt
gactgccaggctcagcaagcccatatcctgcagttgctgcagcagggccacctcaatcag
gccttccagcaggcactgacagctgctgacctgaacctggtgctctatgtgtgtgaaact
gtggacccagcccaggtttttgggcaaccaccctgtccactctcccagcctgttctcctt
tccctcatccagcagctggcatcagaccttggcactagaactgacctcaagctcagttac
ctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgagaccatatgggc
tctgtcatggcacaggtgcgccaaaagcttttccagttcctacaggcggagcctcacaac
tcactcggcaaagcagcccggcgtctcagcctgatgcttcatggccttgtgacccccagc
ctcccttag
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integrated database retrieval system
