Dipodomys merriami (Merriam's kangaroo rat): 138816040
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Entry
138816040 CDS
T11079
Symbol
Xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03008
Ribosome biogenesis in eukaryotes
dmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138816040 (Xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
138816040 (Xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138816040 (Xrn1)
03009 Ribosome biogenesis [BR:
dmer03009
]
138816040 (Xrn1)
03016 Transfer RNA biogenesis [BR:
dmer03016
]
138816040 (Xrn1)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138816040 (Xrn1)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138816040 (Xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
138816040 (Xrn1)
Ribosome biogenesis [BR:
dmer03009
]
Eukaryotic type
Pre-60S particles
RNases
138816040 (Xrn1)
Transfer RNA biogenesis [BR:
dmer03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138816040 (Xrn1)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138816040 (Xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
138816040
NCBI-ProteinID:
XP_069861657
LinkDB
All DBs
Position
Unknown
AA seq
1731 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKIFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINENGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARNYKEKKKLKGQENSLCWAALDKNEGEVVASKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLAAQAACYVQAIQWILHYYYHGVQSWSWF
YPYHYAPFLSDIRNISALKIHFELGKPFKPFEQLLAVLPAASKSLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRNQHSECLM
CWYDKDTEFTYFSPWPEKFPDIERCCTRYEIISLDAWHIDINKSKLTNVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDEPSIENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKVYLGRTPPPSKVVHLGDKEQSNWTKEVQGISDQ
YLRRKGIIINETSALVYAQLLTGRKYQVNQNGEVRLEKQWSKQVLPFVYQTLVKDIRAFD
SRFSSIKTLDDLFPMRSTVFMLGTPYYGCTGEVQDSGDVISEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEE
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKSNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADILF
EVLFDEEFHGGLTIRCSPGRGYRLPTSALVNLSHGNRSETGNQKLTAIVKPQPAVTPCSS
NSSVSSGHLGGLNHSPQSLFVPTQVPAKDDDEFSNIWQSLQGSGKIQHFQPALQEKGTVL
PQEISQVTPQHKSSFNDNSVKYQQRKHDPHRKLKEECKSPKAECQSQKMSSKQTFGGPAK
CNNIKLLKRNESPGVTETQKPSSGMETFLASLSISKENDVQSSHHGEPPNEEHLSPQSFA
MKGTRMLKEILKIDGSDSVDRKNEPKQFGHEVAISSNRKDEYGLSSQAKQNKKLASYTNK
PHSTSEYQSVPSVDSICWSGQIPPVSTPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQV
KLSNGLLVLGPQCHSENEAKEKAALFALQQLGSLGVNFPFPPPIFPNYPPAVPPGTMPPV
FPQPTGWDHYGSNLAFGAAGNMMPSSSHLLGSVPWRPPVPVPGRPFHPTSHSGTVPGAGG
VPGGIHNQFIPLQVTKKRVANKKNLENKEAQSSSQAASLPPSKPASSEVTKATLQERSPA
SLKPSEAAQPVSSQVETAAQGPSMAHQKSSSSARRKSRKLAVNFGISKPSE
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccgctggatctcggagcggtacccttgcctcagcgaggtg
gtgaaagagcaccagattccagaatttgacaacttgtacctggatatgaacggaattata
catcagtgctcccatcctaatgatgatgatgttcacttcaggatttcagatgataaaatc
tttactgatattttccactacttggaagtgttgtttcgaattattaaacctagaaaaata
ttttttatggctgttgatggtgtggctccacgagcaaaaatgaatcagcagcgtgggagg
cgtttcaggtcagccaaggaggcagaagacaaaataaaaaaggccatcgaaaagggagaa
actcttcctacggaggccaggtttgattccaactgcattacaccagggactgaattcatg
gccaggttgcatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctatttctcaggccatgagactccaggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaaaccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgatcatgcttggattaacaagtcatgaagcacac
ttctctctcttacgagaagaggttcgatttggtggcaagaaaacacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttgatgagagaatatattgactat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaagaattatagat
gattggattttgatgggatttctggttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactccctcttctttatggaacatacatcaccattctgccagaa
cttggaggttacattaatgaaaatgggcatctcaacttacctcggtttgagaaatactta
gtgaaactatcagactttgatcgagaacacttcagtgaagtttttgtggacctgaagtgg
ttcgaaagcaaagttggtaacaagtacctcaatgaagcagcaggcattgcagcagaagaa
gccagaaactacaaggaaaagaaaaaattaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggtgaagtggtagcttctaaggataatttagaagatgaaact
gaagatgatgatctatttgaaactgaatttagacaatataaaagaacatattacatgaca
aagatgggagttgatgtagtatctgatgactttctggctgcccaagctgcatgttatgtt
caggcaatccagtggattttgcactactactaccatggagttcagtcatggagctggttt
tatccataccattatgcaccttttctatccgatatccgcaacatcagtgcactcaaaatc
cactttgaactgggaaaaccgttcaagccatttgagcagctgcttgctgtacttccagca
gccagcaaaagtctacttcctacatgctaccagcacttgatgaccagcgaagactcacca
attatagaatattacccacctgattttaaaactgatctaaatggaaaacaacaggaatgg
gaagctgtggttttaataccttttattgatgagaagcgattattggaagctatggaagca
tgtaaccactccctcaagaaggaagagagaaaaagaaaccaacatagtgaatgtctaatg
tgttggtatgataaagacacagaattcacctatttctctccatggccagaaaagttccct
gacatagaacgatgttgtacaaggtatgaaatcatatctttagatgcttggcatatagac
ataaacaagagcaaattaaccaatgtggaccagaaggcgctatatttctgtggattccct
actctgaaacacatcaaacataaatttttcttgaagaaaagtggtgttcaggtattccag
caaagcagtcgcggagaaaacatgatgttggaaatcttagtgaatgcagaatcagatgaa
cctagtatagaaaatgtagcttcgtcagtgcttggaaagtctgtctttgttaattggcct
cacctcgaagaagctagagttgtggctgtatcagatggtgaaactaagttttacttggaa
gaacctccaggaacacagaaagtttatttgggaagaactcctccaccatctaaagttgtt
catcttggagataaagaacagtctaactggactaaagaagtacaaggcatttcagaccaa
tacctaagaagaaaaggaataataataaatgaaacatctgcccttgtgtatgctcagtta
cttacaggtcgtaaatatcaagtaaatcaaaatggtgaagttcgtctggaaaaacagtgg
tcaaagcaagttcttccttttgtttatcaaactcttgttaaggatattcgagccttcgac
tctcgtttctctagtatcaaaacgttggatgatttgtttcctatgagaagtacagtcttt
atgctaggaactccctactatggctgcactggggaagtccaggactcaggtgatgtgatt
tccgaaggtagaattcgagtggtcttcagcatcccgtgtgagcccaatcttgatgctcta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggcttaaatctcaaattcaac
aaaaaaaatgaagaggtgcctggctataccaagaaagttgggagtgagtggatgtattca
tctgcagccgagcagcttcttgccgagtacttagagagagctccagaactatttagttat
atagccaaaaatagccaagaagacgtgttctatgaggatgatatttggcctggagaagaa
gagaatggtgctgagaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttgtctcgttcttcttgcgatttacaaattctggatgccgctattgttgagaaaatt
gaggaggaagttgaaaagtgcaagcaaagaaagagtaacaagaaggtgcgggtgacagtg
aagccccacttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagat
gcagaattccgtctctttgaccgtgttgtaaacgtgagagagaatttttcagtgccagtt
ggccttcgtgggactatcataggaatcaaaggggccaatagagaagctgatatactgttt
gaagtattatttgatgaagaatttcatggaggcctaacaataaggtgctcacctggtaga
ggttaccggctgccaacaagtgccttggtgaacctttctcatgggaatcgctctgaaact
ggaaaccagaagttgactgctatcgtgaaaccacagccagctgtgactccgtgcagctca
aattcatcagtttcatcggggcatttgggaggcctcaaccattctcctcaatcacttttt
gttcctactcaagtacctgctaaagatgatgatgaattttctaacatttggcagtcctta
caaggatcaggaaaaattcagcacttccagccagctcttcaagagaagggtacagtccta
cctcaagaaataagtcaagtaactccacagcataaatctagctttaatgacaacagtgtc
aaatatcagcagagaaaacatgaccctcaccgcaaacttaaagaagagtgtaagagtcct
aaagctgaatgtcagtcacaaaaaatgtccagtaaacagacttttggaggccctgctaaa
tgtaataatatcaagctattgaagagaaatgaaagtccaggagtcacagaaacccaaaag
ccgagctctggaatggagacctttttagcatctttgagtatctctaaagaaaatgatgtg
cagtcatctcatcatggagagcctccgaacgaagagcacttatcaccacagtccttcgct
atgaagggaacacggatgctcaaagaaattttgaaaattgatggctcagacagtgtggac
cgtaaaaatgagccaaaacagtttggtcacgaagttgctatttcctctaatagaaaagat
gaatatggactatcttctcaggctaaacaaaataagaaattggcatcctacacaaacaag
cctcacagcactagtgagtaccaaagtgttccatctgtggacagtatatgttggtctggc
cagatccctcctgtgtccacaccagtaactgaactttctcgaatttgttcccttgtggga
atgccacaaccagatttctcctttctgagaacaccccagacaatgacagtttgccaagta
aaattatctaacggcttactggtccttgggccacagtgccactctgaaaatgaagccaag
gagaaagctgcactctttgccttacaacagctgggctccctaggagtgaattttcctttt
cctccaccaatatttccaaattatcctcctgctgttccaccaggaaccatgcctccagtt
tttccccaacctactggctgggatcactatggaagcaacttagcatttggggcagcaggt
aacatgatgccctcatcctctcatcttcttggctcagtgccatggagaccgccagtgcca
gttcctgggaggcccttccaccccacatcacactccgggacggtgcccggggctggagga
gtaccaggcggcatacacaaccagttcatacctctgcaggtcactaaaaaaagagtagca
aacaaaaagaaccttgagaataaggaggcccagagctcttctcaagccgcctcccttcca
cctagcaagccagcctcctctgaggtcaccaaagcgactctgcaggaaaggtcacctgcc
tctctgaagccctctgaggctgcacagcctgtgtcttctcaagtggaaactgccgcccaa
ggccccagcatggctcaccaaaagtcaagctcttccgcacgaaggaagtcacggaaactg
gctgtcaattttggcatttctaaaccttctgaataa
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integrated database retrieval system
