Dipodomys merriami (Merriam's kangaroo rat): 138816226
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Entry
138816226 CDS
T11079
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04140
Autophagy - animal
dmer04148
Efferocytosis
dmer05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138816226 (Vps18)
04148 Efferocytosis
138816226 (Vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
138816226 (Vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmer04131
]
138816226 (Vps18)
Membrane trafficking [BR:
dmer04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
138816226 (Vps18)
Hops complex
138816226 (Vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf-RING_5
zf-C3HC4_2
zf-RING_16
zf-ANAPC11
KNOX2
zf-RING_2
WD40_Prp19
zf-RING_UBOX
Crescentin
zf-rbx1
zf_RING_Vps8
CNH
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
138816226
NCBI-ProteinID:
XP_069861932
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSDRITSL
VVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDTKVHKMFLDHTGSHLLIALSNTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQVFEAELSASEGG
LFVPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRGTEGAE
AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLKHMVKDAASGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQRRYLESARCYALTHSYFEEIALKFLEARQEEALVEFLQRKLAGL
KPAERTQATLLTTWLTELYLSQLGALQGTPDARNLYRETQERFRSFLSSPRHKEWLFDSR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
MLIRHIPRQLVDAWMELGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVKVLGETE
QAIHNYLLSLYARGQPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEHQDKCASCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAPPPAKGSARAKEADGGAAGGPSREQLKADLDELVAAECVYCGELMIRSIDRPFID
PQRYEEEHLSWL
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatcctggatgagtatgaggactcactgtcccgctcggccgtcctgcagccc
ggctgtcccagcgtgggcatcccgcactcggggtatgtaaatgcccaactggagaaggaa
gtgcccatcttcaccaagcagcgcatcgacttcactccctcagatcgtatcaccagtctc
gtggtctccagcaatcagctctgcatgagcctgggcaaagacacactgctgcgcattgac
ttgggcaaagccaatgaacccaaccatgtggagctggggcgcaaggatgacaccaaagtt
cacaagatgtttctggaccacactggctctcacctgctcatagctctgagcaacactgag
gtcctctacgtgaaccggaatggacagaaggtccggccgctcgcccgctggaaggggcag
ctggtggagagcgtgggctggaacaaggctctgggtacggagagcagcacaggccccatc
ctggtgggcactgcccagggccaggtcttcgaagccgagctctcagccagcgagggtggg
ctgtttgtccctgcccccgacctctacttccgcccattgtatgtgctaaacgaagaaggg
ggtccagcgcccgtgtgctccctggaggccgagcggggccctgatggccgtggctttgtt
attgccaccacgcggcagcgcctcttccagttcataggtcgaggcacggagggggccgag
gcccagggcttctcagggctttttgcagcctacacggaccacccacccccattccgcgag
ttccctagcaacctgggctacagcgaattggctttctatacccccaagttgcgctctgcg
ccccgagcctttgcctggatgatgggagacggtgtgctgtacggctcgctggactgcggg
cgccccgactccctgctgagcgaggagcgggtttgggagtacccagagggggtgggccct
ggggccagcccgcccctggccatcgtgctgacccagttccacttcctgctgctgctggcg
gaccgtgtggaggcggtgtgcacgctcacggggcaggtggtgctgcgcgaccacttcctg
gagaagtttgggccgctgaagcacatggtgaaggacgcggccagcggccagctgtgggcc
tacacggagcgcgccgtcttccgctaccacgtgcagcgcgaggcccgggatgtgtggcgc
acctacctggacatgaaccgcttcgacctggccaaggagtattgtcgcgagcggcccgac
tgcctggacaccgtgctggcccgggaggctgatttctgcttccgccagcggcgctacctg
gagagcgctcgctgctacgcgctgacccacagctactttgaggagatcgccctgaagttc
ttggaggcccggcaggaggaagcgctggtcgagttcctgcagagaaaattagctggtctg
aagccagccgagcggacccaggccacgctcctgaccacctggctgacggagctctacctg
agccagctcggggccctgcagggcaccccagacgcccgtaacctctaccgggaaacccag
gagcgcttccgctccttcctcagcagcccccgacacaaggagtggctctttgacagccgg
gcatcgatccacgagctgctcgccagtcacggggacacggaacacatggtgtactttgcc
gtgatcatgcaggactatgagcgggtggtggcctaccactgccagcatgaggcgtacgag
gaggccctggccgtgctggcccgccaccgagacccccagctcttctataagttctcccct
atgctcatccgtcacatcccccgccagctggtagatgcctggatggaactgggcagccgg
ctggacgcccggcagctcatccctgccctggtgaactacagccagggtggcgaggcccag
caggtgagccaagccatccgctacatggagttctgcgtgaaggtgcttggagaaacggag
caagccattcacaactacctgctgtcgctgtacgcccgaggccagccagactctctgcta
gcctacctggagcaagctggggccagcccgcaccgcgtgcactatgacctcaagtacgcc
ctgcgcctctgcgccgagcatggccaccaccgggcctgtgtccacgtgtacaaggtgctg
gagctgtatgaggaggctgtggacctggccctgcaggttgacgtggacctggccaagcag
tgtgcagacttgcctgaggaggatgaggagctacgtaagaagctgtggctgaagattgca
cggcacgtggtgcaggaggaagaggatgtgcagacagccatggcctgcctggccagctgc
cccttgctcaaaattgaagatgtgctgcccttcttcccggattttgtcaccatcgaccac
ttcaaggaggcaatctgcagctcacttaaggcctacaatcatcacatccaggagctacag
cgggagatggaagaggccacagccagtgcgcagcgcatccggcgggacctgcaggagctg
cgcggccgctatggcaccgtggagcaccaggacaaatgcgccagctgtgacttccccctg
ctcaaccgcccattttacctcttcctctgtggccacatgttccacgctgactgcctcctg
caggccgtgcggcccggcctgcctgcctataagcaggcccggctggaggagctgcagcgc
aagcttggggctgcgccgcccccagccaagggctctgcccgagccaaggaggctgacggt
ggggctgctggggggcctagccgggagcagctcaaggctgacctagatgaactagtggct
gctgaatgtgtgtactgtggggagttgatgatccgctccatagatcgacccttcatcgac
ccccagcgctacgaggaagagcacctcagctggttgtag
DBGET
integrated database retrieval system
