Dipodomys merriami (Merriam's kangaroo rat): 138818751
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Entry
138818751 CDS
T11079
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dmer03009
]
138818751 (Ighmbp2)
03012 Translation factors [BR:
dmer03012
]
138818751 (Ighmbp2)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138818751 (Ighmbp2)
5.6.2.5 RNA 5'-3' helicase
138818751 (Ighmbp2)
Ribosome biogenesis [BR:
dmer03009
]
Eukaryotic type
Other ribosome biogenesis factors
138818751 (Ighmbp2)
Translation factors [BR:
dmer03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
138818751 (Ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
ResIII
AAA_16
nSTAND3
NAT10_TcmA_helicase
DEAD
AAA_25
AAA_22
UvrD-helicase
SLFN-g3_helicase
Flavi_DEAD
nSTAND_NTPase5
AAA
PhoH
ABC_tran
UvrD_C_2
IstB_IS21
NTPase_1
AAA_31
DnaB_C
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
138818751
NCBI-ProteinID:
XP_069865939
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MASAAVEDFVARQLSLLGLERDAELQERRAWQENSSLKELQSRGVCLLKLQLASQRTGLY
GQLLVTFEPGRGGSAAGLPSNSFSSGDIVGLYGSGNQDGQLATGVLTRVTQRSVTVAFDE
SHDFQLNLDPEASYRLLKLANDVTYKRLKNALLSLKKYHSGPASSLIEVLFGGAAPSPAS
EIPPLTFYNPALDASQKEAVSFALAQRELAIIHGPPGTGKTTTVVEIILQVVKQGLKVLC
CAPSNIAVDNLVERLAGRRLRVLRLGHPARLLESVQQHCLDAVLARSDSAQVVADIRRDM
DQIFLKNKKAHDKREKSNFRNEMKLLRKELKEREEAAMVEGLTAADVVLATNTGASPDGP
LKLLPEGHFDVVVIDECAQALEASCWIPLLKARRCILAGDHRQLPPTTASHKAALAGLSL
SLMERLAQERGPAVVRMLTVQYRMHQAIMRWASEAMYHGQLTAHSSVAGHLLRDLPGVAD
TEETSIPLLLVDTAGCGLFELEEDDNQSRGNPGEVRLVTLHIQALVAAGVHAGDIAVIAP
YNLQVELLRQSLAHQYPELEIKSVDGFQGREKEAVILSFVRSNRRGEVGFLAEDRRINVA
VTRARRHVAIVCDSRTVNNHAFLKTLVEYFTEHGEVRTAFEYLEDIVPENYAHEGSQGPC
RAAAQPRGPAFLSKPASAQPLRGPEAKAAPRGEPRKPRVRPPQPRSDGGHPGGTEHLRAK
ITEFLDSEETRLQFPTFLNSHDRLRVHQIAEELGLRHDSAGEGAARYVTVSKRGAPAPTP
LPVDEPRGEQGRQDQPAKEQQPDEEQPDKEQPDKKQQPDEEQPAKEQQPDEEQPDKEKPD
KKEKPDKKPPDKKEKPQKLPQNKKKKREAKGPAAAALPAEEDLDALLSAVTKADNTCSFA
KCAASIATLGQLCQLCGQRYCLSHHLPEVHGCGEKARAHARQKLRREGLPSAGSGARDRP
LDPARRAQLQRRLDLRLGELSGQRTSKKKEKDRGT
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggcggtggaggacttcgtggccagacagttgtccctgctgggcctcgag
agggacgcggagctgcaggagcgcagggcctggcaggagaacagctctctgaaggagctc
cagagcaggggcgtgtgtctgctaaagctgcagctggccagccagcgcacggggctgtac
ggacagcttctggtcaccttcgagcctgggcgaggcgggtctgccgcaggccttcccagc
aacagcttctcttccggcgatatcgtgggtctgtacggttctgggaaccaggatggtcag
cttgccaccggggtcttgactcgagtcacccagaggtcagtcacggtggcctttgatgag
tctcatgacttccagttgaacctggaccctgaagcttcctacaggttgctaaagcttgcc
aacgacgtcacttacaagcgactcaagaatgcgctgctctccctgaagaagtaccactcc
gggcccgcgtcctcgctcatagaagtcctgttcggtggagctgctcccagtcctgccagt
gaaatacccccgctgacgttctacaaccccgccctggacgcctcccagaaggaagctgtg
tcctttgccttggcccagagagaactcgccatcatccacggacctcctggcactgggaaa
accacaaccgtggtggaaataatcctccaagtggtgaagcaggggttgaaggtactgtgc
tgcgcaccctccaacatcgccgtggacaacctggtggagaggctggccggccgcaggctg
cgcgtcctgcgcctcggccaccccgcccgcctgctggagtccgtgcaacagcactgtctg
gacgccgtgctggcgcgcagcgacagcgcccaggttgtcgccgacatcaggagggacatg
gaccagatcttcctgaaaaacaaaaaggcacacgataagagagagaaaagtaatttccgc
aatgaaatgaagctactaagaaaagagctgaaggaaagggaagaagcggccatggtggaa
ggcctcacagcggctgacgtggtgctggcaaccaacacgggtgcctctcccgatggcccc
ctgaagctgctgcccgagggccactttgacgtggtggtcattgacgagtgtgcccaggcc
ctggaggccagctgctggatccctctgctgaaggccaggaggtgcatcctggccggagac
cacaggcagctgccgcccaccacggcctctcacaaggcagcgctggcggggctgtcgctc
agcttgatggagcgcctggcccaggagcgcggccccgctgtggtgcggatgctcacggtg
cagtaccgcatgcaccaggccatcatgcgctgggcctctgaggccatgtaccacgggcag
ctcacagcccactcctccgtggcgggacatctcctgagggacctccccggcgtggctgac
acggaggagaccagcatccccctgctgcttgtggacacggccggctgtggcctatttgaa
ctggaggaagatgacaaccagtccagggggaacccaggcgaagtccgccttgtcactttg
cacatccaggctctggtggccgctggtgtccacgcaggagacatcgctgtcatcgcgccc
tacaaccttcaggtggagctgcttcgacagagcctggcgcaccagtaccccgagctggaa
atcaagtccgtggatggcttccagggccgagagaaggaggctgtgatcctctccttcgtc
aggtccaaccggagaggcgaagttggttttctggctgaggaccggcggatcaatgtcgcg
gtcacccgtgcacggcgccatgtggcgattgtctgtgactcccgcaccgtgaacaaccac
gcttttctaaagacgctggtggagtatttcacagagcacggggaagtgcgcaccgccttc
gagtacctggaggacatcgtccctgagaactatgcccacgagggctcccagggtccctgc
cgagccgctgcccagccccggggccctgcgttcctcagcaagcctgcgagcgcgcagccc
ctgcgcggcccggaggccaaggccgcgccccggggggagcccaggaagcctcgcgtgagg
cccccgcagccccgcagtgacggggggcacccgggtggcacggagcacctgcgggccaag
atcacagagttcctggacagcgaggagacgcggttgcagttccccacattcctcaactcc
catgacaggctgcgcgtgcaccagatcgccgaggagctggggctgcgccacgacagcgct
ggggagggggcggcgcggtacgtcaccgtgagcaagaggggcgccccagcccccacccca
ctgcccgtggacgagccccggggggagcagggcagacaggaccagccagccaaggagcag
cagccagacgaggagcagccagacaaggagcagccagacaagaagcagcagccagacgag
gagcagccagccaaggagcagcagccagacgaggagcagccagacaaggagaagccagac
aagaaggagaagccagacaagaagccgccagacaagaaggagaagccccagaagctgccc
cagaacaagaagaagaagagggaagcaaagggacccgcggccgccgctctgcccgccgag
gaggatcttgacgccctgctgtcggccgtgaccaaggccgacaacacctgcagcttcgcc
aagtgcgcggccagcatcgcgaccctgggccagctctgccagctctgcggccagcgctac
tgcctcagccaccacctgcccgaggtccacggctgcggcgagaaggcccgcgcacacgcc
cgccagaaactccgccgggaggggctccccagtgcaggcagcggggccagggacaggccc
ctggaccccgccaggagggcccagctgcagcgaaggctggacctgaggctgggcgagctc
agcggccagaggaccagtaagaagaaggagaaggacagggggacgtga
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integrated database retrieval system
