Dipodomys merriami (Merriam's kangaroo rat): 138819204
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Entry
138819204 CDS
T11079
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03082
ATP-dependent chromatin remodeling
dmer04714
Thermogenesis
dmer05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138819204 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
138819204 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
138819204 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmer03000
]
138819204 (Arid1b)
03021 Transcription machinery [BR:
dmer03021
]
138819204 (Arid1b)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138819204 (Arid1b)
Transcription factors [BR:
dmer03000
]
Eukaryotic type
Helix-turn-helix
ARID
138819204 (Arid1b)
Transcription machinery [BR:
dmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138819204 (Arid1b)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138819204 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
YL1
Motif
Other DBs
NCBI-GeneID:
138819204
NCBI-ProteinID:
XP_069866646
LinkDB
All DBs
Position
Unknown
AA seq
2347 aa
AA seq
DB search
MAHSASVAAAGTGSAQSGGSEAALKEGGSAAAAPSSSSSSSSSPSSSSSSNAAAAAAAAA
AAAAAASASSSSAGPGSAMETGLLPNHKLKAVGEAPAAPPHHHHHHHHHHHARHAHHHHA
HHLHHHHALQQQLNQFQQQQQQQQQQQQHLPISNNNSLGGAPPPGPDMEPPQRGGAKDSA
AGGQADPPGQPPPSKPADEDDAPPKMGEPAGGRYEHPGLGAQQPPVAVPGGGGGGGGGGG
GGGGGGGGGGGGGGPAAVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHAA
SAAAGTPGSMDPLQNSHEGYPNSQYNHYPGYGRPGAGGGGGGGGGGGGSGGGGGGGGGGS
GGGGGAGAGAVAAAAAAAAAAAAAAGGGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGG
GGAASLSKAAAGAAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGASYPDYSSPS
APPPPPSQPQSQAAAAAAAAAAAAAAGAAAGGQQAAAGLGLGKDLGAQYAAASPAWAAAQ
QRSHPAMSPGTPGPTMGRSQGSPMDPVVMKRPQLYGMGSSPHSQPQQSSPYPGGSYGPPG
TQRYPLGMQGRAPGTLGAMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQA
QYLPPQAQPRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLASED
AAFGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPG
GPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFM
TGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGMSSFQQSNSSGTYGPQMSQYGPQGNY
SRPPTYTGVPSASYSGPGPGMGISANNQMHGQGPNQPCGAMPLGRMPSAAMQSRPFPGNM
SSVTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLM
ASSSPYSQSMNNSSGLMNTQAPPYSMAPTMVNSSTDMMSPSESKLPMTLKADGKDEGTPQ
PESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPK
SSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVC
VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEV
FSTGDSKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPM
PGGRSSTISVHDPFSDMSDTSFPKRNSMTPNTPYQQGMSMPDMMGRMPYEPNKDPFGGMR
KVPGSSEPFMTQGQMPNSSVQDMYNQGPSGAMSNLGMGQRQQFPYGAGYDRRHEPYGQQY
PGQGPPAGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYGGQQQEMYNQ
YGSSYSGPDRRPLQGQYPYPYNRERVQGPGQMQPHGIPPPMMGGPMQSSSGEGPQQNMWA
ARNDMPYPYQNRQGPGGPAQAPPYPGMNRTDEMMVPDQRINHESQWPSHVSQRQPYMSPS
ASVQPITRPPQSSYPTPPSLPNHISRAPSPASFQRSLESRMSPSKSPFLPTVKMQKVMPA
VPTPQVAGPPAQPPPSRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDP
SQKALDHDSGDRGGSVADDSGKEEEDSECLEEEEDDDDEEDEEEEEEEEGEKTESEAKSS
AALGTLDAGADPKERPKQASKFDKLPIKIVRKSKLFVLDRSDRLGRAQEFSSGLLHWQLG
GGDTTEHIQTHFESKMEIPPRRRPPPPASSAGRKKEPEGQGDPEEQPEKSILATIDDVLC
ARPGALPEDSNPGPQAESGKFPFGIQQARSHRNIKLLEDEPRSRDETPLCTTAHWQDSLA
RRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDED
KGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPVLDGLLHWMVCPSAE
AQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDR
KNPVCREMSMALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHM
QPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDV
LFQIGQL
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atggcccacagcgcgagcgtcgccgccgcgggcaccggcagcgcccagagcggcggctcc
gaggcggctctcaaggagggtggaagcgccgccgccgcgccgtcctcctcctcctcctcc
tcctcctccccctcctcctcctcctcctccaacgcggcggcggcggcggcggcggcggcg
gcggcggcggcggcggcctcggcctcttcctcctcggcgggcccgggctcggccatggag
acggggctgctccccaaccacaaactgaaagccgttggcgaggcccccgccgcaccgccc
caccaccaccatcaccaccaccaccaccaccatgcccgccatgcccaccaccaccatgcc
caccacctccaccaccaccacgcactccagcagcagctaaaccagttccagcagcagcag
cagcagcaacagcagcagcagcaacatctccccatctccaacaacaacagcctgggcggc
gcgcctccgcccggcccggacatggagccgccgcaacgtggaggcgccaaggacagtgcc
gcgggcggccaggccgatcccccgggccagcctccgccgagcaagccggccgacgaggac
gacgcgccgcccaagatgggggagccggcgggcggccgctacgagcacccgggcctgggc
gcgcagcagccgccggtcgcggtgcccgggggcggcggcggcggcggcggcggcggcggc
ggcggcggcggtggtggcggcggcggcggcggcggcggcggcccggcggccgtctcggag
tttaataattactatggcagcgctgcccctgctagcggcggccccggcggccgcgctggg
ccttgctttgatcaacatggcggacaacaaagccccgggatggggatgatgcacgccgcc
tccgccgccgccgggacccccggcagcatggaccccctgcagaactcccacgaagggtac
cccaacagccagtacaaccattatccgggttacggccggcccggcgcgggcggcggcggc
ggcggcggcggaggaggaggaggcagcggaggaggaggaggaggaggaggaggaggcagc
ggaggaggaggaggagcaggagcgggagctgtggcggcggcggcggccgcggcggcggcg
gcagcagcagcagcgggaggcggcggcggcggcggcggctatgggggctcgtcctcggga
tacggggtgctgagctccccccggcagcagggcggcggcatgatgatgggccccgggggc
ggcggggccgcgagcctgagcaaggcggccgccggcgcggcggcggggggcttccagcgc
ttcgccgggcagaaccagcacccgtcgggggccaccccgaccctcaaccagctgctcacc
tcgcccagccccatgatgaggagctacggcgccagctacccggactacagcagccccagc
gcgccgccgccgccgccgtcgcagccccagtcccaggcggcggcggcggcggcggcggcg
gcggcagcggcggcggcgggggcggcggcgggcggccagcaggcggccgcgggcttgggc
ttgggcaaggacctgggcgcccagtacgccgccgccagcccggcctgggcggccgcgcaa
caaaggagtcacccggcgatgagccccggcacccccggaccgaccatgggccgatcccag
ggcagtccaatggatccagtggtgatgaagagacctcagttgtatgggatgggcagtagc
ccccattcccagccgcagcagagcagtccgtacccaggaggctcctacggtcccccaggc
acacagcggtaccctctcggcatgcagggccgggctccggggaccctgggggccatgcag
tacccgcagcagcagatgccacctcagtatggacagcaaggtgtgagtggttactgccag
caaggccaacagccatattacagccagcagccacagcccccgcacctccccccgcaggcg
cagtacctgccgccccaggcccagcccaggtaccagccgcagcaggatatgtctcaggaa
ggttatggaactagatctcaacctcctctggctcctggaaaacccaaccatgaagacttg
aatctcattcaacaagaaaggccctcaagtttaccagttgaagtcttggcttcggaggat
gcagcctttggactcaaggacctgtccggctctatcgatgacctccccacgggaacggaa
gcaacgttgagctcagcagtcagtgcctctgggtctacgagtagtcaaggggaccagagc
aaccccgcacagtcgcccttctctccacacgcctcaccccacctctccagcatcccgggc
ggcccgtccccctctcctgtgggctctcccgtaggaagtaaccagtcacgctcgggcccg
atttctcctgcaagtattccaggcagtcagatgccacctcagccacctgggagccagtcc
gaatccagttcccaccctgccttgagtcagtcaccaatgccacaggaaagaggttttatg
acaggcacacaaagaaaccctcagatgtcacagtatggaccccaacagacaggaccctcc
atgtcccctcacccttctcctggggggcagatgcatcctggaatgagtagcttccagcag
agtaactcgagtggcacttacggtccacagatgagccagtatggaccccaaggtaactac
tccagacccccaacgtatactggggtgcccagtgcaagctacagcggcccagggcccggt
atgggtatcagtgccaacaaccagatgcatggacaagggccaaaccagccatgtggtgct
atgcccctgggacgcatgccgtcagctgcgatgcagagcagaccatttcctggaaacatg
agcagcgtgacccccagttctccgggcatgtctcagcagggagggccaggaatggggccg
ccgatgcccacggtgaaccgtaaggcccaggaggcggcagcagccgtgatgcaggctgcg
gcaaactcggcacaaagcaggcaaggcagctttcctggcatgaaccagagtggacttatg
gcttccagctctccctacagccagtctatgaacaacagctccggcttgatgaacacacag
gcacccccctatagcatggcacccaccatggtgaacagctccacagatatgatgtctccc
agtgaatccaagctgcccatgacgctcaaagcggacggcaaagacgaaggcactccacag
cccgagagcaagtcgaaggatagctacagctctcagggtatttctcagcccccaacccca
ggcaacctgccagtcccttccccaatgtcccccagctctgctagcatctcctcctttcat
ggagatgagagcgatagcattagcagcccaggctggccaaagactccatcaagccctaag
tctagctcatccaccaccactggggagaagatcaccaaggtgtatgagctggggaacgag
ccagagaggaagctatgggtcgaccgatacttgactttcatggaagaaaggggctccccg
gtctcgagtctgcccgcagtgggcaagaagcccctggacctgttccgactctacgtctgc
gtcaaggagattggaggtttggcacaggttaataaaaacaagaagtggcgtgagctggcg
accaacctgaacgttggcacgtcaagcagtgcagccagctccctgaagaagcagtatatc
cagtacctgtttgcctttgagtgtaagatcgaaagaggggaggagcccccgccggaagtc
ttcagcaccggagactccaagaagcagcccaagctccagccgccatctcctgctaactcc
ggatccctgcaaggcccccagaccccccagtcaaccggcagcaactcgatggcggaggtt
ccaggtgacctgaagccgcccaccccagcctccacccctcacggacagatgacccccatg
ccaggaggaagaagcagtacaatcagtgtgcacgacccgttctcagacatgagtgatacg
tcgttccccaagcggaactccatgacccccaacaccccgtaccagcaaggcatgagcatg
ccagacatgatgggaaggatgccctatgagcccaacaaggacccctttggtggaatgaga
aaagtgcctggaagtagcgagcccttcatgactcaaggacagatgcccaacagcagcgtg
caggacatgtacaaccaaggtccctctggagccatgtctaacctgggcatggggcagcgg
cagcagttcccctacggagctgggtacgaccgaaggcatgagccttacgggcagcagtac
ccaggccagggccctccagccggacagccgccttatggaggacaccagcctggcctgtat
cctcagcagccgaattacaaacgccacatggatggcatgtacgggcctccagccaagcgt
cacgagggagacatgtacaacatgcagtacggcggccagcagcaggagatgtacaaccag
tatgggagctcctactctggcccagaccggaggcccctgcagggccagtacccgtacccg
tacaacagagagcgggtgcagggcccgggccagatgcagccacacggaatcccgcctccg
atgatgggcggccccatgcagtcgtcctctggcgaagggccgcagcagaatatgtgggct
gcacgcaatgacatgccttacccctaccagaacaggcaaggcccgggcggccctgcgcag
gcccccccttacccgggcatgaaccgcaccgatgagatgatggtccccgaccagaggatc
aaccacgagagccagtggccttctcacgtcagccagcgccagccttacatgtcaccctcg
gcctccgtgcagcccatcacccgcccaccccagtcatcctacccaacgccaccgtcactg
ccaaaccacatctccagggcgcccagccccgcctccttccagcgctccctggagagccgc
atgtctccaagcaagtctccctttctacccaccgtgaagatgcagaaggtcatgcccgcc
gtccccacgccccaggtggccgggcctccagcccagccgccccccagccgcagggagatc
acctttcctcccggctctgtggaggcctcacagccagtcctgaagcagaggcgaaagatc
acctccaaagatatcgttactcctgaggcgtggcgtgtaatgatgtcccttaaatcgggt
ctcttggctgagagcacgtgggctttggacaccatcaacattcttctgtacgatgacagc
accgtggctactttcaatctctcccagttgtctggatttcttgaacttttagtagagtac
tttcgaaaatgcctgattgacatttttgggatccttatggagtacgaagtgggcgacccc
agccagaaagcacttgatcacgattcaggggacagaggtggctccgtggccgacgattct
ggaaaagaggaagaagactccgagtgtctagaggaggaggaggacgatgacgatgaggag
gacgaggaggaggaggaggaggaggaaggtgagaagacagaatctgaggcaaagagcagc
gctgccctgggcaccctggatgccggcgccgaccccaaggagaggcccaagcaggccagt
aagttcgacaagctgccaataaagattgtcaggaagagcaagctgttcgtgctggaccgc
tcggacaggctgggccgcgcgcaggagttcagcagcgggctcctgcactggcagctcggg
ggcggagacaccacggagcacatccagactcacttcgagagcaagatggagatcccgcct
cgcaggcgccccccgccccctgccagctccgcgggtcgaaagaaagagccagaaggccaa
ggcgaccccgaggagcagccggagaagagcatcctggccaccatcgacgacgtcctgtgc
gctcggccgggggctctgcccgaagactcaaacccagggccccaggcagaaagcggcaag
ttcccctttggcatccagcaagccagaagtcaccggaacatcaagctgctggaggatgag
ccccggagccgagacgagacgccgctgtgcacgacggcgcactggcaggactcgctggca
cggcgctgcatctgcgtctccaacatcgtgcggagcctgtccttcgtgccgggcaacgac
gcggagatgtccaaacatccgggcttggtgctgattctgggaaagctgattctgcttcac
cacgagcatccggagaggaagcgagccccgcagacctacgagaaggaggaggatgaggac
aaaggggtggcctgcagcaaagacgagtggtggtgggactgcctggaggtcctgcgagac
aacacgctggtcacgctggccaacatctccgggcagctggacttgtctgcgtacacagag
agcatctgcctgcccgtcctggatggcttgctgcactggatggtctgcccgtccgcagag
gcgcaagacccctttcccacggtggggcccaactcggtcctgtcaccccagagactcgtg
ctggagaccctgtgcaagctcagtatccaggacaacaacgtggacctgatcttggccacg
cctccgtttagtcgtcaggagaaattctatgctacgttagttaggtacgttggggatcga
aaaaacccagtctgtcgagaaatgtccatggcgctcttatcgaaccttgcccagggggac
gcgctggcagcgagggcgatcgctgtgcagaagggaagcatcggaaacttgataagcttc
ctagaggacggggtcaccatggcgcagtaccagcaaagccagcacaacctcatgcacatg
cagcccccgcctctggaaccgccgagcgtagacatgatgtgcagggcggccaaggctttg
ctggccatggccagggtggacgagaaccgctcagaattcctcttgcatgagggccggttg
ctggatatctcaatatcagctgtcctgaactctctggtggcgtcggtcatctgtgatgta
ctatttcagattgggcagttatga
DBGET
integrated database retrieval system
