Dipodomys merriami (Merriam's kangaroo rat): 138819277
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Entry
138819277 CDS
T11079
Symbol
Scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmer03021
]
138819277 (Scaf8)
03041 Spliceosome [BR:
dmer03041
]
138819277 (Scaf8)
Transcription machinery [BR:
dmer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138819277 (Scaf8)
Spliceosome [BR:
dmer03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
138819277 (Scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
138819277
NCBI-ProteinID:
XP_069866777
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLAGTAAMSNTPGT
PVTPVTPANVVQGLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPS
ILQALDAGLVVQLQALTAQLTAAAAAASTLTPLDQGVSFNKKLMDRFDFGEDSEHSEEPK
KDIPTPQLSHVSESVNNSIFHQIAEQLQQQNIEHLRQQLLEQQPQKATPQDSQEGTFGSE
HSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDAVEEEIFEQEAKKVAVRSRSR
THSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQK
KGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVH
RQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDL
DGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAML
QIPVAPAVPTVSLVPPTFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPV
VPPPAIPPVVPTSLVQPPLSMAPETVKDVGFGSLVLPGGSVAGSLAPSALPAGNVFNPPT
KQAEPEDKVPHLIEHQISSGENTRPAIPNDIPTNAAILGGQPPNVTSNSGILGAQRPNVP
SNSEILGVRPANVSSSSGIIGAQPPHILNHSGILGIQPPNVSSSSGLLGVLPPGLPNSSG
LGGIQPPSVTNTSGLLGTQPPAGPQNLPPLNIPSQRMPALPMLDIRPGLIPQAPGPRFPL
IQPGIPPQRGIPPPVVLDSALHPPPRGPFPPGDIFSHPERPFLAPGRQNVDHVTNPDKRI
PLGNDSVQQEGDRDYRFPPVESREGISRPPAMDVRDVVGRPIDPREGPGRPPVDGRDHFG
RPPIDIRENLVRPGIDHLGRRDHFAFTPEKPWGQRGDFDEREHRVLPVFGGPKGLHEERG
RFRAGTFRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRD
RIQNTWVPPPHARVFDYFEGATSQRKVDNVPQVNGENTERHAQPPPLPVPVQNDPELYEK
LTSSNEINKEKSDTVADVESEPVVVESTETEGT
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaacagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaatgactataaacca
cccatttctaaagcgaaaatgacccagattacaaaagcggccatcaaagctattaagttt
tataaacatgtggtccaaagtgttgagaaattcattcagaaatgcaagccagaatataag
gtaccaggactctatgttatcgactccattgtgcgacagtcccgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggacgacaagagtaaaatagtgagagtattaaacttgtggcagaag
aacaatgtatttaagagtgagatcattcagccccttttggacatggcagctgggattcct
cccccagttgtcacacctgtgttggccggtactgcagccatgagcaacactccaggaact
cctgtgacacctgttactccggccaatgtggtccagggcctgcctgacccttgggtatct
cagatcgcaaatacagatacacttgcagctgtcgctcagatcttacaaagtcctcaaggc
cagcagcttcagcagttaatacagaccttacagatacagcagcagaagcctcagccctcc
atcctgcaggcattggatgcgggacttgtggttcagttgcaggcgctcactgcacagctt
acagctgcagctgcagcggccagcactctgacccccttggatcaaggagtctctttcaat
aagaagttgatggatagatttgattttggggaagactctgagcatagcgaagaacccaaa
aaggatatcccaactcctcaactttctcacgtttcagagtctgtgaacaattccattttt
catcagattgcagagcagctgcaacagcaaaacattgaacatcttagacagcagctcctg
gagcagcagcctcagaaggcaactccccaggatagtcaagaaggaacatttgggtcagag
cattcggcatcaccatcacaaggaagcagccagcaacatttccttgaacctgaagcaaat
ttggatgattccatagatattcagcaacaggatatggatatagatgaagggcaagatgca
gtggaagaggagatctttgaacaagaagctaagaaagtagccgttcgctcaagatcaaga
actcactcgagatctcgttcaagatcaccaagaaaacgaaggtccaggtcacgatctggt
tctcgaaagcgtaagcacagaaagcgatcacgctcccgctccagagaaaggaagaggaag
tcatcacgttcctactcaagtgaaaggagagccagagaaagagaaaaagaacggcagaaa
aagggattacctccaattagatctaaaacattaagtgtatgtagtactactctctgggtt
ggtcaggtggacaagaaggcaacacaacaagatttaaccaacctttttgaagagtttgga
caaattgaatctattaatatgattcctcccaggggctgcgcttatgtctgtatggttcat
cggcaagatgcttttcgagctcttcagaaactgagttcagggtcctataaaattggttcc
aaggtcattaagattgcttgggctctaaacaaaggtgtaaaaactgaatacaaacagttt
tgggatgtagatcttggagttacatatataccatgggaaaaagttaaagtggatgacttg
gacggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaaaca
gtgaaaagttcagaaccagttaaagagactgtccagaccacacagagtccaactccagtt
gaaaaggagactgtggtcacaacgcaggcagaggttttccctccaccggttgccatgttg
cagattccagtagcacctgcagtgccgacagttagtttagtcccaccaacgtttcctgtg
tcaatgcctgtgccccctcctggattcagtcctatccctccgcctccttttctgcgagca
agctttaacccttcacagccacctcctggtttcatgccacctccagtccctccacctgtg
gtaccaccccctgcaatccctccagtagtaccaacatctttagtgcaaccgccattgtcc
atggccccagaaactgtgaaagatgttggctttggtagccttgttctgccaggtggttct
gttgccggcagtctagctccttccgctctaccagctggaaatgtttttaatcctccaact
aaacaagcagagcctgaagacaaagtacctcatcttatagaacatcagatttcctctggt
gaaaacaccagaccagcgattccaaatgatattccaactaatgctgcgattttaggagga
cagccacctaatgtgacgagtaattctggaattctgggagcccaaagaccaaatgtacca
agtaattctgaaattcttggggttcggccagcaaatgtttccagcagttctgggattatt
ggagcacaaccaccacatatcttaaatcattctggaattttgggaatacagccaccaaat
gtgtcgagtagttctggacttctgggtgtgctgcctcctggtctgcctaacagttctgga
cttggagggatacagccaccaagtgtcacaaatacttccggacttttgggaacgcagcca
ccagctggacctcaaaacttgccccctctgaatatccctagtcaaaggatgcctgcattg
ccaatgttggacattcgtccaggactaataccacaggcacctggaccaagattcccttta
attcagcctggaattccgccccagcggggtatccctcccccagtggtcctggactcagct
cttcacccaccgccccggggaccttttcctccaggagatattttcagtcatccagaaaga
ccttttctagcgcctggaagacaaaacgtagaccacgttaccaatccagacaaaagaatt
ccacttgggaatgacagtgttcaacaagaaggagatcgagattaccggtttcctccggta
gaaagcagggaaggcattagtaggcctcctgcaatggatgttagggatgtggttggacgg
cctatagatccaagagaaggtcctggaaggcctccagtagatggtagggatcattttgga
cgacctcctatagacataagggagaatctcgtaagaccaggtatagatcaccttggtcga
agagaccactttgcttttactccagagaagccttgggggcagagaggagattttgacgag
agagagcatcgggttctccctgtttttggtggtccaaaaggcttacatgaagaaagagga
aggtttcgggctggaacctttcgctttgatcctagaagtggtccttggaaccgaggattt
ggacaagaagttcacagagattttgatgaccgcagaagaccctgggaaaggcaaagggat
agggacgacagagattttgatttctgcagagaaatgaacggaaatcgtcttggacgtgat
agaattcaaaacacttgggtcccccctcctcatgctcgggtttttgattattttgaaggg
gccacttcccaacgtaaagttgataacgtgcctcaggttaatggtgaaaatacagagaga
catgctcagccaccgcctttgccagttccagtacagaacgatcctgaactttatgaaaaa
ctgacatcttcaaatgagataaacaaggagaagagtgacacagttgctgatgtagaaagt
gaaccagtggtggtagaaagcacagaaactgaggggacataa
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