Dipodomys merriami (Merriam's kangaroo rat): 138819995
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Entry
138819995 CDS
T11079
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmer03036
]
138819995 (Shoc1)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Meiosis-specific proteins
Others
138819995 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
RVT_3
Motif
Other DBs
NCBI-GeneID:
138819995
NCBI-ProteinID:
XP_069867720
LinkDB
All DBs
Position
Unknown
AA seq
1647 aa
AA seq
DB search
MFSAFRYYAMDYLREDLVRKKFCRGLFLQNPSCLCQDGNNIDDEYRRPWTKVTEVSVQGM
TDDSLLDEWKADFFVEDFLEQQTITGIVNPINGVFEEIVPSSNPDSPTNIEDILITLKDD
SATFTSIESLENYPALQAQNRDLNIEDDKINFVNDLMTDKSKLPALNTVSSRSELLMVKG
LLLDFKEQSAEEADLFREYFSFQEDLEGFLKERFYVDKENFCQKKLVGLHELSTFPSQCE
SLISTNIRQKIDTPSSSEPKESLNFMPEVINNIDDSEKLLQGDLTATHGVDTGNIKSSST
EIVTIQSQSEPECSEPGKLEIPLSSLNTISQQFSVNLLHTELQTFSFSPICKISSHIVEE
TMSKYSMPWQLQICRSSLISFLLTGPTIEEPNRQHSVTELRKIFSIEEEGLVISPIKAAW
WKQVGLNPVMTETLEHLNPYLHLDNLSSSDTKMEIHLPKKGLPLEYLSHLSICYKWESCT
AWLEHKSHSLPIIHINNKKSKNDHTAFPQKGLSSPNEIPDLHVSEECVSAKRQKREENLK
NNQELTGRIIQKKEKEDNIELDCSVPSIESSSSSKIKKTSVEHDQKEENDLDLLSNVVVP
PTESSSTSKIKKTSFEHDKTQEDDLDLLSNVVVPPTESSSSSKIKKTSFEHDKTQEDDLD
LLSNVVVPPTESSSTSKSKKTSFEHNKKQENDLDLLSNFIVPPTESSSSSKIKKTSFEHD
KKQENDLDLLSNFIMLRNKYNTCTSKTEDTVHDKKDEFQHKEECSLMLQKQSPIVSTNKT
LKNINEETVADNVIEIQASDTQCQAFYLLESAAAPILKKLVSLCPFPAANWKFATVLFDQ
TRFFLKEQEKVISDNIPQGTNCEREIIYKHAAVLHLLVTIRDVLLTCNLDTALGYLTNAK
DVYKNILGSYLDDIWRQMKIVQFIKDKKPEANHKLQELQNQILMWMKSEQQITVLIIIRM
NSDNEKHLLTKILNKIEGLTLTAFHSNGEKDFLESTAVLNGNSCVIVNNQNIGADFPWRS
FSFVVEYNHAGHSCWKMHCEKLNIPFVAFKVILPDTVLARTTVLDRFGGFILGIQIPYVF
FATEGLLNTPEILQLLESNYSITLVERCCSESLKLFGSTEYYVVVTIDEHTAIILQDLEE
LNYERASDNIIMRLMALSFQYSDCWIIIYIKRTLNSGYHLTEKTLHHLALIYAALVSSGL
KSEELDVKLVITPGGEKTASIIRQIADHSLMSSKRDPHEWLDKSWLEVLPSKEEMYLLDF
PCINPLVAQLMLNQVPSLHWLLSATPCQLQEILPSIPEKVLKHFCSITSLFKINSSSITK
SPPSLSPLEDRNEISNFISQNSASDLSDSAIQEHNNAYCSYSESEETVKEDTNIPTNYNS
SFMELRKTPCILPPVTSYTLTSNLKSFNCSPNVEQSSPFLINTATKKSVCNSFPNQNDPG
SDIFSLGLTQINRETQRGTTPNFINYQKKGPPGTKEVSAPMFSVEDSLSSWDFRHGNFRK
NACKKQNHSFNLKYGVESTYDKWYSQKDNLLTNQQESLSDKLESFTCESSNIGTTTLWRQ
LPSVPSLNVFSVSDSNANQKEISSLNMYPRPGKSSGQKRYLESSSNSGDKEPLAGSMYSK
LPPQKKRRLMYEKVPGRSDGQTRLRFF
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcattcagatattatgcgatggactatttacgtgaggatttagttagaaag
aagttctgcagaggtttatttcttcaaaatccttcatgtttatgtcaagatggaaacaat
attgatgacgaatataggagaccatggacaaaagtcactgaagtttcagttcagggaatg
acagatgactcactattggatgaatggaaagcagatttctttgtagaagatttccttgag
caacaaacaattacaggaatagtgaatccaattaatggtgtatttgaagagattgttcca
agttcaaacccagactctccaacaaacatagaagacatcttaattaccctcaaggatgac
agtgcaacctttacatctattgaaagtttagaaaattatccagcactgcaagcacagaac
cgagatttaaatattgaagatgataaaataaattttgtaaatgatttgatgactgataaa
agtaaactaccagctttgaatactgtttcaagtagatcagaactacttatggtaaaaggc
cttcttttagatttcaaagaacagagcgctgaagaagctgatttgtttagggaatatttt
tcttttcaagaagatttggaaggttttttaaaagaaagattttatgtggataaagaaaac
ttttgtcagaagaaattagtaggtttacatgagctatcaacttttccttctcagtgtgaa
tccttaatatctacaaatatcagacaaaaaattgatactccatcatcctcagaaccaaag
gagtcattaaatttcatgccagaagtaataaataatatagatgacagtgaaaaacttttg
caaggagatctcactgctacacatggagttgatactggaaatataaaaagcagttccaca
gaaatagtgactattcaaagtcagagtgaaccagagtgcagtgaaccaggaaaattggaa
ataccactatctagcctcaacacaataagccaacagttttcagtgaatttgttacataca
gaacttcaaacattttcattttctcctatttgtaaaattagttcacatattgttgaagaa
acaatgagcaaatattctatgccgtggcaattacaaatctgcagaagctctctcatctca
tttttgcttacagggccaaccattgaagagcccaacagacaacattcagttacagagttg
agaaaaatcttttctattgaagaagaagggcttgtgattagtcccataaaggcagcatgg
tggaaacaagtaggactaaatccagtaatgacagaaactttggaacatctgaatccatat
ttgcaccttgacaatctatcttctagtgatactaaaatggaaatacacttgcctaaaaaa
ggacttccattagaatatttgtctcatctgagcatatgctataaatgggaatcatgtaca
gcatggctagaacataaaagtcattccttacctatcatacatattaataataagaaatct
aaaaatgatcacacagcatttccacaaaagggtctatcttcaccaaatgaaataccagat
ctgcatgtgtctgaagaatgtgtctctgctaaaagacaaaaaagagaagaaaacctaaag
aataatcaagaactaaccggtagaataatccaaaagaaagaaaaggaagataacattgaa
cttgactgttcagtaccatctattgaatcatcttcatcttcaaaaattaagaaaacatct
gttgaacatgatcaaaaagaggagaatgatttggaccttttaagcaacgttgttgtacca
cctactgaatcttcttccacttcaaaaattaagaaaacatcttttgagcatgataaaaca
caagaggatgatttggaccttttaagcaacgttgttgtaccacctactgaatcatcttcc
tcttcaaaaattaagaaaacatcttttgagcatgataaaacacaagaggatgatttggac
cttttaagcaacgttgttgtaccacctactgaatcttcttccacttcaaaaagtaagaaa
acatcttttgaacacaataaaaaacaggagaatgatttggaccttttgagcaactttatt
gtaccacctactgaatcatcttcctcttcaaaaattaagaaaacatcttttgaacatgat
aaaaaacaggagaatgatttggaccttttgagcaactttattatgctgcgaaataaatat
aatacttgtacctcaaagactgaagacacagtccatgacaaaaaagatgaatttcaacat
aaagaagaatgttctttgatgcttcaaaaacaaagtcccattgtttctactaacaaaact
ctcaagaacataaatgaagaaacagtagcagataatgtcattgaaattcaagcctcagat
actcagtgccaagccttctatctcttagaatcagcagctgcccccatcttaaaaaaactt
gtgtccctttgtccttttcctgctgctaattggaaatttgccactgttctttttgaccaa
acaaggttcttcttaaaagaacaagaaaaagtgataagtgataacatccctcaaggtaca
aattgcgaaagagaaattatatacaagcatgctgctgtcctacaccttctggtgacaatt
agagatgtccttttaacatgcaacttggacacagcattgggatatttgacaaatgcaaaa
gatgtctacaaaaacattttaggctcctacttggatgatatttggagacagatgaagatt
gtacagtttatcaaagataaaaagcctgaagcaaaccataagttacaagaattgcaaaat
caaatcctaatgtggatgaaaagtgaacaacaaattactgtgctgattataataagaatg
aactcagacaatgaaaaacatttgctcactaaaatccttaacaaaatagaaggcttaaca
ttgactgctttccattcaaatggagaaaaagactttctggaatctacagcagttttgaat
gggaattcctgtgtaattgtaaataatcaaaatattggagcagattttccctggaggagt
ttctcatttgttgtggaatacaatcatgcaggacattcgtgttggaagatgcattgtgaa
aagttgaacattccctttgtggcctttaaagtgattcttccagacacagtcttagccaga
acaaccgtgctggatagatttggtggttttattttgggaattcagattccatatgtattt
tttgcaactgaaggacttcttaatactccagaaatacttcaactgctggaatctaactat
agtatcacactagtggagagatgctgcagtgagtcactgaaactctttggaagtacagag
tattatgtggtggtaacaattgatgaacacactgctataattttacaggacctagaagaa
ctgaattatgagagagcatcagacaacatcattatgaggttgatggcattatcattccag
tatagtgattgttggatcataatatatatcaagagaaccttaaattcagggtatcatctt
acagaaaagacacttcatcacctcgcattgatttatgcagctttggtttcttctggcctt
aaatctgaagaactggatgtaaagcttgtaattactccaggaggagaaaagactgcatca
ataattcgtcaaattgctgatcacagtttaatgagctcgaaaagagatcctcatgaatgg
ctggataaatcatggcttgaagttttaccatccaaggaagaaatgtacttacttgatttt
ccatgcattaacccattggtggctcagctgatgttaaatcaagtgccttcgctgcattgg
ctattatcagcaaccccatgtcaacttcaggaaattctacccagcattccagaaaaagtg
ttaaagcatttttgtagcatcacttccttattcaagattaattcttcctccataacaaaa
tcacctccaagtttatcacctctggaagacaggaatgagattagtaactttatttctcag
aattcagcttcggacctttcagactctgccattcaagagcataataatgcctattgctca
tactcagaatcagaggagacagtgaaggaagacacaaacatccctacaaattacaactct
tctttcatggaactaagaaaaaccccatgtattttacctcctgtgacttcttacactcta
accagcaatttgaaaagctttaattgtagccccaatgttgaacaaagcagtccttttctg
attaatacagcaaccaagaaatcagtttgtaactcctttccaaatcagaatgatcctggg
tcagatatcttttctttgggtctaacacagataaatcgtgaaactcagaggggaacaacc
cctaatttcataaattatcagaaaaaaggaccaccaggaacaaaagaagtatctgcccct
atgttttcagtagaggactctctctcgtcatgggactttcgtcatgggaactttaggaaa
aatgcatgtaagaaacaaaatcactcattcaacttgaaatatggagtagagtctacctat
gacaaatggtactctcaaaaagataatttacttactaatcagcaagagtctctatcagat
aaattggaaagttttacatgtgaaagttcaaatattgggactacgactttgtggagacaa
ttaccatctgttcccagtttgaatgtattcagtgtttctgactctaatgcaaatcaaaaa
gaaatcagcagccttaatatgtacccaagacctggaaaaagttcaggacagaaaagatat
cttgaatcatcatctaattcaggagacaaggaaccattagcaggttcaatgtactcaaaa
ttaccaccacagaaaaaaagacgcctaatgtatgaaaaagttccaggaagaagtgatgga
cagactcggctgaggtttttttga
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integrated database retrieval system
